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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4dca ADP Aminoglycoside phosphotransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4dca ADPAminoglycoside phosphotransferase / 0.792
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3b2t M33Fibroblast growth factor receptor 2 / 0.699
4uya AGSMitogen-activated protein kinase kinase kinase 21 2.7.11.25 0.693
3ung ADPCRISPR system Cmr subunit Cmr2 / 0.691
4dt8 ADNAPH(2'')-Id / 0.679
3uim ANPBRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 2.7.10.1 0.676
2pvr ANPCasein kinase II subunit alpha 2.7.11.1 0.674
3hav ATPAminoglycoside phosphotransferase / 0.674
4ffr ATPUncharacterized protein / 0.673
2xcl ANPPhosphoribosylamine--glycine ligase / 0.672
3blq ATPCyclin-dependent kinase 9 2.7.11.22 0.670
2eva ADNMitogen-activated protein kinase kinase kinase 7 2.7.11.25 0.668
2cgw 3C3Serine/threonine-protein kinase Chk1 2.7.11.1 0.667
3w0r ANPHygromycin-B 4-O-kinase 2.7.1.163 0.666
4s34 ANPMitogen-activated protein kinase 1 2.7.11.24 0.666
4gt3 ATPMitogen-activated protein kinase 1 2.7.11.24 0.665
2z7q ACPRibosomal protein S6 kinase alpha-1 2.7.11.1 0.664
2pvy ACPFibroblast growth factor receptor 2 / 0.663
1jpa ANPEphrin type-B receptor 2 2.7.10.1 0.661
2qo9 ANPEphrin type-A receptor 3 2.7.10.1 0.660
3w0s ANPHygromycin-B 4-O-kinase 2.7.1.163 0.660
5cu6 ATPCasein kinase II subunit alpha 2.7.11.1 0.660
3w0n ANPHygromycin-B 4-O-kinase 2.7.1.163 0.658
4dta ADNAPH(2'')-Id / 0.657
3wo1 ADPAlanine--anticapsin ligase / 0.654
5c03 AGSNon-receptor tyrosine-protein kinase TYK2 2.7.10.2 0.654
5l8l ADPAurora kinase A 2.7.11.1 0.653
2yw2 ATPPhosphoribosylamine--glycine ligase / 0.652
4xfj ANPArgininosuccinate synthase / 0.652
4fvr ATPTyrosine-protein kinase JAK2 / 0.651
2yee 2ECHeat shock protein HSP 90-alpha / 0.650
4j97 ACPFibroblast growth factor receptor 2 / 0.650