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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4dc3 2FA Putative adenosine kinase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4dc3 2FAPutative adenosine kinase / 1.041
3vaq ADNPutative adenosine kinase / 0.935
3uq6 ADNPutative adenosine kinase / 0.920
3uq9 TBNPutative adenosine kinase / 0.901
3vas ADNPutative adenosine kinase / 0.886
3otx AP5Adenosine kinase, putative / 0.797
2i6a 5I5Adenosine kinase 2.7.1.20 0.756
2a9y 26AAdenosine kinase 2.7.1.20 0.750
2ab8 MTPAdenosine kinase 2.7.1.20 0.734
2a9z 26AAdenosine kinase 2.7.1.20 0.726
4ube 2FAAdenosine kinase 2.7.1.20 0.681
2qg4 UGAUDP-glucose 6-dehydrogenase 1.1.1.22 0.669
2zbv ADNUncharacterized protein / 0.667
3v8v SAMRibosomal RNA large subunit methyltransferase K/L 2.1.1.173 0.662
4xeo A5AAlanine--tRNA ligase, cytoplasmic / 0.660
2pkk 2FAAdenosine kinase 2.7.1.20 0.658
1nw3 SAMHistone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.653
4yuz S4MSpermidine synthase, putative / 0.651