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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4dc0 NDP Putative ketoacyl reductase 1.3.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
4dc0 NDPPutative ketoacyl reductase 1.3.1 1.373
4dbz NDPPutative ketoacyl reductase 1.3.1 1.279
1x7h NDPPutative ketoacyl reductase 1.3.1 1.159
3qrw NDPPutative ketoacyl reductase 1.3.1 1.145
4dc1 NDPPutative ketoacyl reductase 1.3.1 1.120
1x7g NAPPutative ketoacyl reductase 1.3.1 1.088
3ai2 NDPNADPH-sorbose reductase / 1.087
3ai3 NDPNADPH-sorbose reductase / 1.022
1w4z NAPPutative ketoacyl reductase 1.3.1 0.994
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.971
5js6 NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.958
3w8d NAD3-hydroxybutyrate dehydrogenase / 0.955
3w8f NAD3-hydroxybutyrate dehydrogenase / 0.945
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.940
5jsf NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.939
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.936
1geg NADDiacetyl reductase [(S)-acetoin forming] 1.1.1.304 0.935
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.929
3l77 NJPShort-chain alcohol dehydrogenase / 0.924
4b79 NADProbable short-chain dehydrogenase / 0.923
4iqg NAPShort-chain dehydrogenase/reductase SDR / 0.923
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.923
1xse NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.913
3wds NADNADH-dependent quinuclidinone reductase / 0.913
5jla NADPutative short-chain dehydrogenase/reductase / 0.910
2wsb NADGalactitol dehydrogenase / 0.905
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 0.905
2jah NDPClavaldehyde dehydrogenase / 0.903
1vl8 NAPOxidoreductase, short chain dehydrogenase/reductase family / 0.902
1u7t TDT3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.901
3ak4 NADNADH-dependent quinuclidinone reductase / 0.901
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.899
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.892
3a28 NADL-2,3-butanediol dehydrogenase 1.1.1.76 0.892
4qec NAPElxO / 0.892
2o23 NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.891
4kwh NAPReductase homolog / 0.888
4wec NADShort chain dehydrogenase / 0.884
2q2q NADBeta-D-hydroxybutyrate dehydrogenase / 0.883
4qed NAPElxO / 0.883
3tn7 NJPShort-chain alcohol dehydrogenase / 0.882
2ekp NAD2-deoxy-D-gluconate 3-dehydrogenase / 0.881
1e3w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.878
1e6w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.877
3p19 NDPPutative blue fluorescent protein / 0.877
4yai NAIC alpha-dehydrogenase / 0.873
2ag5 NAD3-hydroxybutyrate dehydrogenase type 2 / 0.872
3sju NDPKeto reductase / 0.868
2gdz NAD15-hydroxyprostaglandin dehydrogenase [NAD(+)] 1.1.1.141 0.867
3sx2 NADUncharacterized protein / 0.867
4c7k NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.867
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.866
2dte NAIGlucose 1-dehydrogenase related protein / 0.865
3rku NAPNADP-dependent 3-hydroxy acid dehydrogenase / 0.862
2c29 NAPDihydroflavonol 4-reductase / 0.861
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.861
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.857
4nbu NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.857
1ae1 NAPTropinone reductase 1 / 0.855
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.854
4yag NAIC alpha-dehydrogenase / 0.854
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.853
3rj9 NADAlcohol dehydrogenase 1.1.1.1 0.853
4fj0 NAP17beta-hydroxysteroid dehydrogenase / 0.852
4gh5 NADShort-chain dehydrogenase/reductase SDR / 0.852
1rwb NADGlucose 1-dehydrogenase 1.1.1.47 0.851
2zat NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.851
4o0l NDPNADPH-dependent 3-quinuclidinone reductase / 0.846
4fj1 NAP17beta-hydroxysteroid dehydrogenase / 0.843
3o26 NDPSalutaridine reductase / 0.842
1g0n NDPTetrahydroxynaphthalene reductase 1.1.1.252 0.840
2ztv NADD(-)-3-hydroxybutyrate dehydrogenase / 0.838
3uce NDPDehydrogenase / 0.837
2ztm NADD(-)-3-hydroxybutyrate dehydrogenase / 0.836
3rj5 NADAlcohol dehydrogenase 1.1.1.1 0.834
4fn4 NADShort chain dehydrogenase / 0.834
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.831
3d3w NAPL-xylulose reductase 1.1.1.10 0.830
1e3s NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.829
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 0.829
1nff NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.817
1w8d NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.817
3s55 NADPutative short-chain dehydrogenase/reductase / 0.817
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.814
1mg5 NAIAlcohol dehydrogenase 1.1.1.1 0.813
1iy8 NADLevodione reductase / 0.812
1pr9 NAPL-xylulose reductase 1.1.1.10 0.811
4pvd NDPNADPH-dependent methylglyoxal reductase GRE2 / 0.810
4fc7 NAPPeroxisomal 2,4-dienoyl-CoA reductase 1.3.1.34 0.808
4tqg NDPPutative dTDP-d-glucose 4 6-dehydratase / 0.807
1gee NADGlucose 1-dehydrogenase 1.1.1.47 0.805
2wdz NADGalactitol dehydrogenase / 0.803
1nfr NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.802
2dkn NAI3-alpha-hydroxysteroid dehydrogenase / 0.802
3iah NAPPutative oxoacyl-(Acyl carrier protein) reductase / 0.801
1gco NADGlucose 1-dehydrogenase 1.1.1.47 0.800
2hrb NAPCarbonyl reductase [NADPH] 3 1.1.1.184 0.799
3vdq NAD3-hydroxybutyrate dehydrogenase / 0.798
3ndr NADPyridoxal 4-dehydrogenase 1.1.1.107 0.797
5idw NAPShort-chain dehydrogenase/reductase SDR / 0.796
2rbe NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.794
3gy0 NAPNAD(P)-dependent oxidoreductase / 0.794
3o4r NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.792
1bdb NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase / 0.789
3lu1 NADUDP-N-acetylglucosamine 4-epimerase / 0.789
1ipe NDPTropinone reductase 2 1.1.1.236 0.788
3g49 NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.788
3ruc NADUDP-N-acetylglucosamine 4-epimerase / 0.786
4j7u NAPSepiapterin reductase 1.1.1.153 0.784
4j7x NAPSepiapterin reductase 1.1.1.153 0.784
3tsc NADUncharacterized protein / 0.778
4cql NADEstradiol 17-beta-dehydrogenase 8 1.1.1.62 0.777
4nbw NADShort-chain dehydrogenase/reductase SDR / 0.776
2ztu NADD(-)-3-hydroxybutyrate dehydrogenase / 0.775
4bmv NAPShort-chain dehydrogenase / 0.775
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 0.773
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.772
1zem NADXylitol dehydrogenase / 0.770
2v6g NAP3-oxo-Delta(4,5)-steroid 5-beta-reductase / 0.770
1oaa NAPSepiapterin reductase 1.1.1.153 0.769
4dmm NAP3-oxoacyl-[acyl-carrier-protein] reductase / 0.769
4k6f NAPPutative Acetoacetyl-CoA reductase / 0.767
2b4q NAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.765
4zju NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.765
3tox NAPPutative oxidoreductase / 0.763
2bd0 NAPSepiapterin reductase / 0.760
1u7t NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.759
4hwk NAPSepiapterin reductase 1.1.1.153 0.759
4i5e NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.759
3qwf NAP17beta-hydroxysteroid dehydrogenase / 0.758
4hxy NDPPlm1 / 0.757
3ruh NADUDP-N-acetylglucosamine 4-epimerase / 0.756
1b2l NDCAlcohol dehydrogenase 1.1.1.1 0.753
2c59 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.753
3bmo NAPPteridine reductase / 0.753
4imp NDPPolyketide synthase extender modules 3-4 / 0.748
2b35 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.746
5eio NAP[LysW]-L-2-aminoadipate 6-phosphate reductase / 0.746
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 0.745
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.742
3r3s NADPutative oxidoreductase / 0.742
1xkq NDPUncharacterized protein / 0.741
2wyv NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.739
3rue NADUDP-N-acetylglucosamine 4-epimerase / 0.739
4lis NADUDP-glucose 4-epimerase (Eurofung) / 0.739
3u4c NDPNADPH-dependent reductase BacG / 0.737
1sby NADAlcohol dehydrogenase 1.1.1.1 0.736
4xyb NDPFormate dehydrogenase / 0.736
1i2b NADUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.734
3aut NAIGlucose 1-dehydrogenase 4 1.1.1.47 0.734
4bms NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.731
1b14 NADAlcohol dehydrogenase 1.1.1.1 0.730
4ej0 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.730
1b15 NAEAlcohol dehydrogenase 1.1.1.1 0.727
1g6k NADGlucose 1-dehydrogenase 1.1.1.47 0.727
1rkx NADCDP-D-glucose-4,6-dehydratase / 0.727
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.727
2bgm NAJSecoisolariciresinol dehydrogenase 1.1.1.331 0.725
3rua NADUDP-N-acetylglucosamine 4-epimerase / 0.725
4bqp NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.725
2gn8 NAPUDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.724
3ru9 NADUDP-N-acetylglucosamine 4-epimerase / 0.724
3sj7 NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative / 0.724
4idg NADPutative UDP-glucose 4-epimerase / 0.724
2ieb ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.723
4twr NADNAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epimerase / 0.720
1w73 NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.719
1sny NAPLD36273p / 0.718
3a9w NADNDP-sugar epimerase / 0.718
5bt9 NAP3-oxoacyl-(Acyl-carrier-protein) reductase / 0.717
2p5y NADUDP-glucose 4-epimerase / 0.716
3ru7 NADUDP-N-acetylglucosamine 4-epimerase / 0.716
2aq8 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.714
1kvr NADUDP-glucose 4-epimerase 5.1.3.2 0.712
1orr NADCDP-paratose 2-epimerase / 0.712
1qyv NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.712
3o03 NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase) / 0.712
4u7w NDPMxaA / 0.712
4gll NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.711
3sxp NADADP-L-glycero-D-mannoheptose-6-epimerase / 0.710
4b8w NAPGDP-L-fucose synthase 1.1.1.271 0.710
5jy1 NADPutative short-chain dehydrogenase/reductase / 0.710
3ruf NADUDP-N-acetylglucosamine 4-epimerase / 0.708
4trn NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.708
5jyd NADShort chain dehydrogenase / 0.707
5koi NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.707
2p5u NADUDP-glucose 4-epimerase / 0.706
3baz NAPHydroxyphenylpyruvate reductase 1.1.1.237 0.706
2y99 NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase 1.3.1.56 0.705
5b1y NDP3-oxoacyl-[acyl-carrier-protein] reductase / 0.705
2yy7 NADL-threonine dehydrogenase / 0.704
5d2e NAPMlnE / 0.704
3ko8 NADNAD-dependent epimerase/dehydratase / 0.703
2c54 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.702
2nv6 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.702
4dre NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.701
2hun NAD336aa long hypothetical dTDP-glucose 4,6-dehydratase / 0.700
3of2 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.700
2idz ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.699
3ajr NADNDP-sugar epimerase / 0.698
4yac NAIC alpha-dehydrogenase / 0.697
3lqf NADGalactitol dehydrogenase / 0.696
2b69 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.695
3h4v NAPPteridine reductase 1 1.5.1.33 0.695
3uxy NADShort-chain dehydrogenase/reductase SDR / 0.695
1g1a NADdTDP-glucose 4,6-dehydratase / 0.693
3rud NADUDP-N-acetylglucosamine 4-epimerase / 0.691
3icp NADNAD-dependent epimerase/dehydratase / 0.690
5j23 A2RPutative 2-hydroxyacid dehydrogenase / 0.690
2hsd NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.687
1e7y NDPGlucose-6-phosphate 1-dehydrogenase / 0.686
3aw9 NADNAD-dependent epimerase/dehydratase / 0.686
3mje NDPAmphB / 0.685
4e5y NDPGDP-L-fucose synthase 1.1.1.271 0.685
1enz NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.683
3uic NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.683
3i6i NDPPutative leucoanthocyanidin reductase 1 / 0.682
4bkq NAIEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.682
4fj2 NAP17beta-hydroxysteroid dehydrogenase / 0.682
1nah NADUDP-glucose 4-epimerase 5.1.3.2 0.681
4egb NADdTDP-glucose 4,6-dehydratase / 0.681
4wji NAPPutative cyclohexadienyl dehydrogenase and ADH prephenate dehydrogenase / 0.681
1bvr NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.680
2x6t NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.680
3ehe NADUDP-glucose 4-epimerase (GalE-1) / 0.680
3pef NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.680
4xb2 NDP319aa long hypothetical homoserine dehydrogenase / 0.680
5cpb NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.680
1eny NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.679
2q1u NADPutative nucleotide sugar epimerase/ dehydratase / 0.679
3pdu NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.679
1eq2 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.678
2b37 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.677
4lk3 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.677
1bxk NADdTDP-glucose 4,6-dehydratase 2 / 0.675
2pr2 DG1Enoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.675
2yut NAPPutative short-chain oxidoreductase / 0.675
4m87 NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.675
3zu2 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.674
1ahh NAD7-alpha-hydroxysteroid dehydrogenase 1.1.1.159 0.671
1ek5 NADUDP-glucose 4-epimerase / 0.671
1n7h NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.671
2h9i EADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.671
3geg NADShort-chain dehydrogenase/reductase SDR / 0.671
4d03 NAPPhenylacetone monooxygenase 1.14.13.92 0.671
2pzj NADPutative nucleotide sugar epimerase/ dehydratase / 0.670
3oey NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.670
2ie0 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.669
1n7g NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.668
2q1s NAIPutative nucleotide sugar epimerase/ dehydratase / 0.668
1rpn NDPGDP-mannose 4,6-dehydratase / 0.667
4eue NAITrans-2-enoyl-CoA reductase [NADH] / 0.667
4fw8 NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.667
1p44 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.666
2ntv P1HEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.666
4hbg NDP3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.664
4b4o NDPEpimerase family protein SDR39U1 / 0.662
1n2s NAIdTDP-4-dehydrorhamnose reductase 1.1.1.133 0.659
4dti NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.659
2ydx NAPMethionine adenosyltransferase 2 subunit beta / 0.658
3a4v NADNDP-sugar epimerase / 0.658
3ijr NADOxidoreductase, short chain dehydrogenase/reductase family / 0.658
2yw9 NAPEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.657
4d04 NAPPhenylacetone monooxygenase 1.14.13.92 0.656
1dir NADDihydropteridine reductase 1.5.1.34 0.655
2x86 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.655
1wnt NAPL-xylulose reductase 1.1.1.10 0.654
2pk3 A2RGDP-6-deoxy-D-mannose reductase / 0.654
3qvx NADMyo-inositol-1-phosphate synthase (Ino1) / 0.653
3i6q NDPPutative leucoanthocyanidin reductase 1 / 0.650