Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4d9w X32 Thermolysin 3.4.24.27

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4d9w X32Thermolysin 3.4.24.27 1.137
4h57 0PJThermolysin 3.4.24.27 1.053
3t87 UBZThermolysin 3.4.24.27 1.036
3t8c UBWThermolysin 3.4.24.27 1.020
3t74 UBYThermolysin 3.4.24.27 1.011
3t8d UBVThermolysin 3.4.24.27 1.009
3fv4 1U4Thermolysin 3.4.24.27 0.941
3t8h UBSThermolysin 3.4.24.27 0.932
4tmn 0PKThermolysin 3.4.24.27 0.926
3fvp UB2Thermolysin 3.4.24.27 0.873
4cth RDFNeprilysin / 0.867
6tmn 0PIThermolysin 3.4.24.27 0.856
4b52 RDFBacillolysin / 0.844
2tmn 0FAThermolysin 3.4.24.27 0.837
4zr5 RDFNeprilysin / 0.794
3zuk RDFEndopeptidase, peptidase family M13 / 0.784
1u4g HPIElastase 3.4.24.26 0.712
3f28 S7BThermolysin 3.4.24.27 0.710
3dwb RDFEndothelin-converting enzyme 1 3.4.24.71 0.683
1qf2 TI3Thermolysin 3.4.24.27 0.677
3f2p S3BThermolysin 3.4.24.27 0.669
1r1j OIRNeprilysin / 0.668
1r1i TI1Neprilysin / 0.667