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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4d9f DCS D-cysteine desulfhydrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4d9f DCSD-cysteine desulfhydrase / 1.034
4d9e LCSD-cysteine desulfhydrase / 0.927
4d96 5PAD-cysteine desulfhydrase / 0.738
2ycn P61Tyrosine phenol-lyase 4.1.99.2 0.705
1j0d 5PA1-aminocyclopropane-1-carboxylate deaminase 3.5.99.7 0.704
4d9m 0JODiaminopropionate ammonia-lyase 4.3.1.15 0.694
4wxg 2BOSerine hydroxymethyltransferase / 0.678
1bmf ADPATP synthase subunit alpha, mitochondrial / 0.676
1bmf ADPATP synthase subunit beta, mitochondrial 3.6.3.14 0.676
4wlj IK2Kynurenine--oxoglutarate transaminase 1 2.6.1.7 0.671
4gp6 ADPMetallophosphoesterase / 0.670
1s07 PLPAdenosylmethionine-8-amino-7-oxononanoate aminotransferase 2.6.1.62 0.668
1ao0 5GPAmidophosphoribosyltransferase / 0.665
4luc GDPGTPase KRas / 0.664
4geb 0LDKynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.663
2y65 ADPKinesin heavy chain / 0.662
5cvc PLPSerine racemase / 0.660
4obe GDPGTPase KRas / 0.659
1z0a GDPRas-related protein Rab-2A / 0.657
2fq6 P3FCystathionine beta-lyase MetC 4.4.1.8 0.657
4dsu GDPGTPase KRas / 0.657
4ldj GDPGTPase KRas / 0.657
4tq9 GDPGTPase KRas / 0.656
1z0d GDPRas-related protein Rab-5C / 0.654
4ao4 PLKBeta-transaminase / 0.652
4ge9 0L0Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.652
1xdq MTEProtein-methionine-sulfoxide reductase catalytic subunit MsrP / 0.651
2zts ADPUncharacterized protein / 0.651
3k1j ADPATP-dependent protease Lon / 0.650