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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4d9e LCS D-cysteine desulfhydrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4d9e LCSD-cysteine desulfhydrase / 1.146
4d9f DCSD-cysteine desulfhydrase / 0.927
4d96 5PAD-cysteine desulfhydrase / 0.910
1j0d 5PA1-aminocyclopropane-1-carboxylate deaminase 3.5.99.7 0.738
4d9m 0JODiaminopropionate ammonia-lyase 4.3.1.15 0.702
4geb 0LDKynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.682
2clo PLSTryptophan synthase beta chain 4.2.1.20 0.676
4gdy 0X1Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.671
3l9h ADPKinesin-like protein KIF11 / 0.655
4ge7 0K5Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.655
2dr3 ADPUPF0273 protein PH0284 / 0.654
2xae ADPKinesin-like protein KIF11 / 0.654
4wlj IK2Kynurenine--oxoglutarate transaminase 1 2.6.1.7 0.654
3fwy ADPLight-independent protochlorophyllide reductase iron-sulfur ATP-binding protein / 0.652
3kkq GDPRas-related protein M-Ras / 0.652
1d5c GDPGTPase (Rab6) / 0.651
4dzz ADPPlasmid partitioning protein ParF / 0.650