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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4d96 5PA D-cysteine desulfhydrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4d96 5PAD-cysteine desulfhydrase / 1.364
4d9e LCSD-cysteine desulfhydrase / 0.910
1j0d 5PA1-aminocyclopropane-1-carboxylate deaminase 3.5.99.7 0.790
4d9f DCSD-cysteine desulfhydrase / 0.738
2ycn P61Tyrosine phenol-lyase 4.1.99.2 0.705
4ao4 PLKBeta-transaminase / 0.703
4d9m 0JODiaminopropionate ammonia-lyase 4.3.1.15 0.703
4gdy 0X1Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.685
4wlj IK2Kynurenine--oxoglutarate transaminase 1 2.6.1.7 0.683
1cl2 PPGCystathionine beta-lyase MetC 4.4.1.8 0.681
3zrr PXGSerine-pyruvate aminotransferase (AgxT) / 0.679
4ge4 0KEKynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.679
1arg PPDAspartate aminotransferase 2.6.1.1 0.673
1cq6 PY4Aspartate aminotransferase 2.6.1.1 0.672
4ge7 0K5Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.670
4ge9 0L0Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.667
4geb 0LDKynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.664
3ei8 PL5LL-diaminopimelate aminotransferase, chloroplastic / 0.663
1map KETAspartate aminotransferase, mitochondrial 2.6.1.1 0.658
3e39 FMNNitroreductase / 0.658
1ahg TYR_PLPAspartate aminotransferase 2.6.1.1 0.657
1cq7 PY5Aspartate aminotransferase 2.6.1.1 0.655
1akb PPDAspartate aminotransferase, mitochondrial 2.6.1.1 0.651