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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4d7m TDC Tetracycline repressor protein class D

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4d7m TDCTetracycline repressor protein class D / 0.960
5fkl TDCTetracycline repressor protein class D / 0.892
5fko TDCTetracycline repressor protein class D / 0.880
2o7o DXTTetracycline repressor protein class D / 0.866
2xpu TDCTetracycline repressor protein class D / 0.863
2vkv TDCTetracycline repressor protein class D / 0.860
4b3a TACTetracycline repressor protein class D / 0.829
5fkk TDCTetracycline repressor protein class D / 0.821
5fkn TDCTetracycline repressor protein class D / 0.816
5fkm TDCTetracycline repressor protein class D / 0.811
2vke TACTetracycline repressor protein class D / 0.807
2xpw OTCTetracycline repressor protein class D / 0.798
2xrl DXTTetracycline repressor protein class D / 0.794
2trt TACTetracycline repressor protein class D / 0.772
1ork ATCTetracycline repressor protein class D / 0.767
4abz T1CTetracycline repressor protein class D / 0.757
2tct CTCTetracycline repressor protein class D / 0.746
2xpv MIYTetracycline repressor protein class D / 0.743
2vpr TDCTetracycline repressor protein class H / 0.734
2fj1 CTCTetracycline repressor protein class D / 0.724
4v2g CTCTetracycline repressor protein class D / 0.667
4ac0 MIYTetracycline repressor protein class B from transposon Tn10 / 0.665
4aux XTCTetracycline repressor protein class D / 0.656