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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4cx5 HW8 Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4cx5 HW8Nitric oxide synthase, brain 1.14.13.39 0.912
3ufu HW8Nitric oxide synthase, brain 1.14.13.39 0.857
3rqm X2ENitric oxide synthase, brain 1.14.13.39 0.764
3jwt JI5Nitric oxide synthase, brain 1.14.13.39 0.762
3png 8CXNitric oxide synthase, brain 1.14.13.39 0.756
3nlz 3XDNitric oxide synthase, brain 1.14.13.39 0.742
3rql X2DNitric oxide synthase, brain 1.14.13.39 0.732
3n62 XFJNitric oxide synthase, brain 1.14.13.39 0.721
3pnf 8BXNitric oxide synthase, brain 1.14.13.39 0.721
3ufw HW0Nitric oxide synthase, brain 1.14.13.39 0.718
3rqj Y2BNitric oxide synthase, brain 1.14.13.39 0.703
3nly 3XCNitric oxide synthase, brain 1.14.13.39 0.701
3pne 8AXNitric oxide synthase, brain 1.14.13.39 0.700
3n65 XFJNitric oxide synthase, brain 1.14.13.39 0.699
3ufv HW9Nitric oxide synthase, brain 1.14.13.39 0.695
4cx4 HW9Nitric oxide synthase, brain 1.14.13.39 0.694
4k5g Q13Nitric oxide synthase, brain 1.14.13.39 0.691
3uft HW7Nitric oxide synthase, brain 1.14.13.39 0.682
3svq JK4Nitric oxide synthase, brain 1.14.13.39 0.679
3n5w XFJNitric oxide synthase, brain 1.14.13.39 0.669
3ufq HW5Nitric oxide synthase, brain 1.14.13.39 0.669
4cx3 HW8Nitric oxide synthase, brain 1.14.13.39 0.667
3jx3 JI5Nitric oxide synthase, brain 1.14.13.39 0.665
3ufs HW6Nitric oxide synthase, brain 1.14.13.39 0.665
3nny 59RNitric oxide synthase, brain 1.14.13.39 0.657
3jx6 JI5Nitric oxide synthase, brain 1.14.13.39 0.655
4eux HW1Nitric oxide synthase, brain 1.14.13.39 0.655
3n5y XFLNitric oxide synthase, brain 1.14.13.39 0.652
3jx0 JI4Nitric oxide synthase, brain 1.14.13.39 0.651