sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4cuk | NAI | D-lactate dehydrogenase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 4cuk | NAI | D-lactate dehydrogenase | / | 1.021 | |
| 2gsd | NAD | Formate dehydrogenase | / | 0.672 | |
| 1j5p | NAD | L-aspartate dehydrogenase | 1.4.1.21 | 0.669 | |
| 1pzg | A3D | Lactate dehydrogenase | / | 0.663 | |
| 1pzh | NAD | Lactate dehydrogenase | / | 0.659 | |
| 2dc1 | NAD | Probable L-aspartate dehydrogenase | / | 0.656 | |
| 3pqf | NAD | L-lactate dehydrogenase | 1.1.1.27 | 0.656 | |
| 1h2h | NAD | L-aspartate dehydrogenase | 1.4.1.21 | 0.655 | |
| 1sow | NAD | L-lactate dehydrogenase | 1.1.1.27 | 0.654 | |
| 4e5n | NAD | Phosphonate dehydrogenase | 1.20.1.1 | 0.653 | |
| 4k28 | NAD | Shikimate dehydrogenase family protein | / | 0.652 | |
| 1nff | NAD | 3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase | 1.1.1.53 | 0.651 |