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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4co4 ATP Nitrogen regulatory protein P-II 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4co4 ATPNitrogen regulatory protein P-II 1 / 1.096
1v3s ATPSignaling protein / 0.858
3ta0 ATPNitrogen regulatory protein P-II (GlnB-3) / 0.780
4ozn ATPAmmonium transporter / 0.776
1v9o ADPSignaling protein / 0.764
3ta1 ADPNitrogen regulatory protein P-II (GlnB-3) / 0.706
3ncq ATPNitrogen regulatory protein P-II (GlnB-2) / 0.679
3ncr ADPNitrogen regulatory protein P-II (GlnB-2) / 0.676
5ah5 LSSLeucine--tRNA ligase / 0.673
1w29 TS06,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.671
3au2 DGTDNA polymerase beta family (X family) / 0.664
3bbd SAHRibosomal RNA small subunit methyltransferase Nep1 2.1.1 0.663
2xul ATPNitrogen regulatory protein P-II / 0.662
1q6p 213Tyrosine-protein phosphatase non-receptor type 1 3.1.3.48 0.659
3hyo ADPPyridoxal kinase / 0.658
4fak SAMRibosomal RNA large subunit methyltransferase H / 0.657
3zec ANPAdenosine monophosphate-protein transferase SoFic 2.7.7.n1 0.654
3wdm ADN4-phosphopantoate--beta-alanine ligase 6.3.2.36 0.653
2egv SAMRibosomal RNA small subunit methyltransferase E 2.1.1.193 0.652