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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ckr DI1 Epithelial discoidin domain-containing receptor 1 2.7.10.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ckr DI1Epithelial discoidin domain-containing receptor 1 2.7.10.1 1.316
4bkj STIEpithelial discoidin domain-containing receptor 1 2.7.10.1 0.890
2e2b 406Tyrosine-protein kinase ABL1 2.7.10.2 0.853
4equ G6ISerine/threonine-protein kinase 10 2.7.11.1 0.802
1iep STITyrosine-protein kinase ABL1 2.7.10.2 0.780
1w83 L11Mitogen-activated protein kinase 14 / 0.764
3d83 GK6Mitogen-activated protein kinase 14 / 0.758
3bv2 P38Mitogen-activated protein kinase 14 / 0.751
2hyy STITyrosine-protein kinase ABL1 2.7.10.2 0.750
3kq7 KQ7Mitogen-activated protein kinase 14 / 0.750
3gvu STIAbelson tyrosine-protein kinase 2 2.7.10.2 0.749
4aa0 AA0Mitogen-activated protein kinase 14 / 0.746
4i5h G17Mitogen-activated protein kinase 1 2.7.11.24 0.739
3bv3 P39Mitogen-activated protein kinase 14 / 0.736
4tyj 0LIFibroblast growth factor receptor 4 2.7.10.1 0.730
1wbt WBTMitogen-activated protein kinase 14 / 0.728
1wbs LI2Mitogen-activated protein kinase 14 / 0.727
3mvm 39PMitogen-activated protein kinase 14 / 0.724
4kiq 1RAMitogen-activated protein kinase 14 / 0.717
2osc MUHAngiopoietin-1 receptor 2.7.10.1 0.712
3iph G11Mitogen-activated protein kinase 14 / 0.710
3oez STIProto-oncogene tyrosine-protein kinase Src 2.7.10.2 0.707
2p4i MR9Angiopoietin-1 receptor 2.7.10.1 0.705
4kin 1M8Mitogen-activated protein kinase 14 / 0.703
2hiw 7MPTyrosine-protein kinase ABL1 2.7.10.2 0.699
3ugc 046Tyrosine-protein kinase JAK2 / 0.697
3vnt 0JAVascular endothelial growth factor receptor 2 2.7.10.1 0.696
3dtw A96Vascular endothelial growth factor receptor 2 2.7.10.1 0.695
4uxq 0LIFibroblast growth factor receptor 4 2.7.10.1 0.694
3gcu R48Mitogen-activated protein kinase 14 / 0.692
4kip 1R9Mitogen-activated protein kinase 14 / 0.691
3l8x N4DMitogen-activated protein kinase 14 / 0.688
4aa5 NQBMitogen-activated protein kinase 14 / 0.687
3e93 19BMitogen-activated protein kinase 14 / 0.681
5hid B1ESerine/threonine-protein kinase B-raf 2.7.11.1 0.681
2rg5 279Mitogen-activated protein kinase 14 / 0.678
3s4q NK0Mitogen-activated protein kinase 14 / 0.676
2zb1 GK4Mitogen-activated protein kinase 14 / 0.675
3gfe P37Mitogen-activated protein kinase 14 / 0.671
3be2 RAJVascular endothelial growth factor receptor 2 2.7.10.1 0.669
2og8 1N8Tyrosine-protein kinase Lck 2.7.10.2 0.666
3uvq FS8Mitogen-activated protein kinase 14 / 0.666
3d7z GK5Mitogen-activated protein kinase 14 / 0.657
3cs9 NILTyrosine-protein kinase ABL1 2.7.10.2 0.655
3nnx EDDMitogen-activated protein kinase 14 / 0.655
3gi3 B10Mitogen-activated protein kinase 14 / 0.652
3dt1 P40Mitogen-activated protein kinase 14 / 0.651
3hv5 R24Mitogen-activated protein kinase 14 / 0.651
3uvp 048Mitogen-activated protein kinase 14 / 0.651