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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ck3 K1T Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ck3 K1TIntegrase / 0.979
4cjq VXOIntegrase / 0.956
4cjk H39Integrase / 0.940
4cj5 4VWIntegrase / 0.919
4cje Q31Integrase / 0.914
4cjp 4D2Integrase / 0.903
4cj4 S3GIntegrase / 0.901
4cj3 E4FIntegrase / 0.854
4cf1 IY7Integrase / 0.808
4cf2 3GMIntegrase / 0.805
4cf0 O5UIntegrase / 0.797
4cfb OM3Integrase / 0.784
4cee B0TIntegrase / 0.766
4cf8 V7HIntegrase / 0.764
3zsw ZSWIntegrase / 0.762
4cea ZSWIntegrase / 0.762
4ck1 OM1Integrase / 0.762
3zt1 OM1Integrase / 0.761
4cer VL4Integrase / 0.760
4cef D0TIntegrase / 0.759
4cgd 8P3Integrase / 0.752
3zsx N44Integrase / 0.751
4cgg K5QIntegrase / 0.744
4ce9 O3NIntegrase / 0.740
3zt0 ZT0Integrase / 0.693
3zsy OM3Integrase / 0.691
4cif JDXIntegrase / 0.677
4cjs L0YIntegrase / 0.672
3zsq O4NIntegrase / 0.656