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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4cjs L0Y Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4cjs L0YIntegrase / 1.103
3zsr O3NIntegrase / 1.050
4cez O3NIntegrase / 1.050
4ceq QCHIntegrase / 1.033
4cfb OM3Integrase / 0.959
4ce9 O3NIntegrase / 0.951
3zsx N44Integrase / 0.939
4cig X0PIntegrase / 0.936
3zsq O4NIntegrase / 0.933
4cjr FYMIntegrase / 0.933
3zsy OM3Integrase / 0.930
3zcm PX3Integrase / 0.922
4cef D0TIntegrase / 0.905
3zsv ZSVIntegrase / 0.902
4ceb ZSVIntegrase / 0.902
4ceo G0TIntegrase / 0.886
4cer VL4Integrase / 0.883
4cif JDXIntegrase / 0.880
4cf8 V7HIntegrase / 0.874
3zt0 ZT0Integrase / 0.873
3zsw ZSWIntegrase / 0.857
4cea ZSWIntegrase / 0.857
4cec 2SSIntegrase / 0.850
4cee B0TIntegrase / 0.839
4ck1 OM1Integrase / 0.839
3zt2 ZT2Integrase / 0.826
3zt1 OM1Integrase / 0.818
4cf1 IY7Integrase / 0.817
4cjf RVNIntegrase / 0.815
4cf0 O5UIntegrase / 0.812
4cgd 8P3Integrase / 0.808
4ces NFWIntegrase / 0.804
3zt3 ZT4Integrase / 0.802
4cf2 3GMIntegrase / 0.800
4ced 9NSIntegrase / 0.799
4cgf UJ6Integrase / 0.778
3zsz OM2Integrase / 0.761
4cgh LOZIntegrase / 0.755
4cgi NZLIntegrase / 0.755
4cgg K5QIntegrase / 0.753
4cie Y7NIntegrase / 0.751
4chq CWUIntegrase / 0.747
4cgj NZLIntegrase / 0.707
4cfd S8YIntegrase / 0.692
4cj3 E4FIntegrase / 0.682
4ck3 K1TIntegrase / 0.672
4cje Q31Integrase / 0.667
4cju JNSIntegrase / 0.653