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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4cjq VXO Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4cjq VXOIntegrase / 1.078
4cjk H39Integrase / 1.005
4cj5 4VWIntegrase / 1.004
4cj4 S3GIntegrase / 0.981
4cje Q31Integrase / 0.980
4cjp 4D2Integrase / 0.969
4ck3 K1TIntegrase / 0.956
4cj3 E4FIntegrase / 0.870
4cgf UJ6Integrase / 0.833
4cfb OM3Integrase / 0.800
4ces NFWIntegrase / 0.753
3zsz OM2Integrase / 0.749
4cfd S8YIntegrase / 0.740
4cfa WOPIntegrase / 0.684
4cjr FYMIntegrase / 0.670
3zsv ZSVIntegrase / 0.668
4ceb ZSVIntegrase / 0.668
4ced 9NSIntegrase / 0.660
4cie Y7NIntegrase / 0.657