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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4cj3 E4F Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4cj3 E4FIntegrase / 1.068
4cf0 O5UIntegrase / 0.975
4cie Y7NIntegrase / 0.967
4cf2 3GMIntegrase / 0.945
4cf1 IY7Integrase / 0.937
4cgf UJ6Integrase / 0.931
4chq CWUIntegrase / 0.926
3zt2 ZT2Integrase / 0.921
4cgj NZLIntegrase / 0.919
4cjf RVNIntegrase / 0.918
4cju JNSIntegrase / 0.899
3zt3 ZT4Integrase / 0.896
4cgh LOZIntegrase / 0.892
4cjq VXOIntegrase / 0.870
4ck3 K1TIntegrase / 0.854
4cgi NZLIntegrase / 0.852
4cgg K5QIntegrase / 0.847
4cee B0TIntegrase / 0.843
4cj5 4VWIntegrase / 0.833
3zsw ZSWIntegrase / 0.815
4cea ZSWIntegrase / 0.815
4cje Q31Integrase / 0.813
4cgd 8P3Integrase / 0.787
4cj4 S3GIntegrase / 0.774
3zsy OM3Integrase / 0.751
4ces NFWIntegrase / 0.730
4cif JDXIntegrase / 0.728
4cjk H39Integrase / 0.701
3zsx N44Integrase / 0.699
4cjr FYMIntegrase / 0.696
4cfd S8YIntegrase / 0.690
4cjs L0YIntegrase / 0.682
4cfb OM3Integrase / 0.679
3zsq O4NIntegrase / 0.678
5dq8 FLFTranscriptional enhancer factor TEF-4 / 0.657
4cjp 4D2Integrase / 0.655
4cfc 7NVIntegrase / 0.650