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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4cie Y7N Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4cie Y7NIntegrase / 1.088
4cgj NZLIntegrase / 1.029
4cgi NZLIntegrase / 0.987
4chq CWUIntegrase / 0.969
4cj3 E4FIntegrase / 0.967
4cgh LOZIntegrase / 0.951
4cf0 O5UIntegrase / 0.947
4cgf UJ6Integrase / 0.947
4cju JNSIntegrase / 0.933
3zt2 ZT2Integrase / 0.923
3zt3 ZT4Integrase / 0.922
4cjf RVNIntegrase / 0.917
4cf1 IY7Integrase / 0.858
4cfb OM3Integrase / 0.856
4cf2 3GMIntegrase / 0.855
4cgg K5QIntegrase / 0.855
3zsx N44Integrase / 0.844
4cec 2SSIntegrase / 0.798
3zt1 OM1Integrase / 0.793
4ce9 O3NIntegrase / 0.784
4ceq QCHIntegrase / 0.783
4cef D0TIntegrase / 0.773
3zcm PX3Integrase / 0.770
4ceo G0TIntegrase / 0.767
4ces NFWIntegrase / 0.757
4cjs L0YIntegrase / 0.751
4cjr FYMIntegrase / 0.742
4cif JDXIntegrase / 0.737
4ced 9NSIntegrase / 0.731
4cig X0PIntegrase / 0.726
3zsv ZSVIntegrase / 0.715
4ceb ZSVIntegrase / 0.715
4ck1 OM1Integrase / 0.711
3zt0 ZT0Integrase / 0.705
3zsy OM3Integrase / 0.684
3zsz OM2Integrase / 0.678
3zsq O4NIntegrase / 0.676
4cjq VXOIntegrase / 0.657