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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4chq CWU Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4chq CWUIntegrase / 1.040
4cie Y7NIntegrase / 0.969
4cgf UJ6Integrase / 0.957
4cgh LOZIntegrase / 0.951
4cgj NZLIntegrase / 0.948
4cf1 IY7Integrase / 0.936
4cgi NZLIntegrase / 0.932
3zt3 ZT4Integrase / 0.927
4cj3 E4FIntegrase / 0.926
4cf0 O5UIntegrase / 0.921
4cjf RVNIntegrase / 0.917
4cju JNSIntegrase / 0.905
3zt2 ZT2Integrase / 0.902
4cf2 3GMIntegrase / 0.894
4cgg K5QIntegrase / 0.862
4cfb OM3Integrase / 0.848
3zsx N44Integrase / 0.831
4cee B0TIntegrase / 0.820
4cf8 V7HIntegrase / 0.796
4ceq QCHIntegrase / 0.789
3zt1 OM1Integrase / 0.778
4cef D0TIntegrase / 0.776
4cif JDXIntegrase / 0.776
3zsw ZSWIntegrase / 0.769
4cea ZSWIntegrase / 0.769
4ck1 OM1Integrase / 0.769
3zcm PX3Integrase / 0.765
4ceo G0TIntegrase / 0.765
4cec 2SSIntegrase / 0.759
4cgd 8P3Integrase / 0.750
4cjs L0YIntegrase / 0.747
4cjr FYMIntegrase / 0.746
4cig X0PIntegrase / 0.732
3zsr O3NIntegrase / 0.729
4cez O3NIntegrase / 0.729
3zsv ZSVIntegrase / 0.699
4ceb ZSVIntegrase / 0.699
4cer VL4Integrase / 0.699
3zt0 ZT0Integrase / 0.679
3qqh X0ACyclin-dependent kinase 2 2.7.11.22 0.668
4fsm HK1Serine/threonine-protein kinase Chk1 2.7.11.1 0.662