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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4cgp MYA Glycylpeptide N-tetradecanoyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4cgp MYAGlycylpeptide N-tetradecanoyltransferase / 1.806
5a28 MYAGlycylpeptide N-tetradecanoyltransferase / 1.731
5ag4 MYAGlycylpeptide N-tetradecanoyltransferase / 1.709
2wsa MYAGlycylpeptide N-tetradecanoyltransferase / 1.706
4a31 MYAGlycylpeptide N-tetradecanoyltransferase / 1.698
5ag5 MYAGlycylpeptide N-tetradecanoyltransferase / 1.687
5a27 MYAGlycylpeptide N-tetradecanoyltransferase / 1.686
4a32 MYAGlycylpeptide N-tetradecanoyltransferase / 1.682
4ucn MYAGlycylpeptide N-tetradecanoyltransferase / 1.675
4a2z MYAGlycylpeptide N-tetradecanoyltransferase / 1.672
5ag6 MYAGlycylpeptide N-tetradecanoyltransferase / 1.655
4a33 MYAGlycylpeptide N-tetradecanoyltransferase / 1.645
2wuu NHWGlycylpeptide N-tetradecanoyltransferase / 1.641
4c2z MYAGlycylpeptide N-tetradecanoyltransferase 1 / 1.627
4a95 NHWGlycylpeptide N-tetradecanoyltransferase / 1.573
4b14 NHWGlycylpeptide N-tetradecanoyltransferase / 1.559
4c2y MYAGlycylpeptide N-tetradecanoyltransferase 1 / 1.550
2ync YNCGlycylpeptide N-tetradecanoyltransferase / 1.543
4b12 NHWGlycylpeptide N-tetradecanoyltransferase / 1.538
5ag7 MYAGlycylpeptide N-tetradecanoyltransferase / 1.536
4b13 NHWGlycylpeptide N-tetradecanoyltransferase / 1.510
4b11 NHWGlycylpeptide N-tetradecanoyltransferase / 1.508
2yne NHWGlycylpeptide N-tetradecanoyltransferase / 1.507
4c68 NHWGlycylpeptide N-tetradecanoyltransferase / 1.483
4bbh NHWGlycylpeptide N-tetradecanoyltransferase / 1.479
4a30 MYAGlycylpeptide N-tetradecanoyltransferase / 1.473
4b10 NHWGlycylpeptide N-tetradecanoyltransferase / 1.438
4c2x NHWGlycylpeptide N-tetradecanoyltransferase 2 / 1.339
4cav MYAGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.079
4cax MYAGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.020
4qbj NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.919
2nmt NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.858
1iid NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.852
3te4 ACODopamine N-acetyltransferase / 0.719
3pgp ACOUncharacterized protein / 0.718
4qvt ACOAcetyltransferase YpeA 2.3.1 0.700
4ua3 COAN-alpha-acetyltransferase 40 2.3.1 0.693
4mxe ACON-acetyltransferase ESCO1 2.3.1 0.686
1s3z COAAminoglycoside N(6')-acetyltransferase type 1 / 0.666
3jpv 1DRSerine/threonine-protein kinase pim-1 2.7.11.1 0.660
2vez ACOGlucosamine 6-phosphate acetyltransferase, putative / 0.658
1icq OPD12-oxophytodienoate reductase 1 1.3.1.42 0.655
3whc ST9Fatty acid metabolism regulator protein / 0.654
1que FADFerredoxin--NADP reductase 1.18.1.2 0.652
2gd2 CAAProbable alpha-methylacyl-CoA racemase Mcr (2-methylacyl-CoA racemase) (2-arylpropionyl-CoA epimerase ) / 0.652