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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4cgj NZL Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4cgj NZLIntegrase / 1.102
4cie Y7NIntegrase / 1.029
4cgi NZLIntegrase / 0.994
4cgh LOZIntegrase / 0.955
4chq CWUIntegrase / 0.948
4cgf UJ6Integrase / 0.932
4cj3 E4FIntegrase / 0.919
4cf0 O5UIntegrase / 0.907
3zt2 ZT2Integrase / 0.902
4cju JNSIntegrase / 0.902
3zt3 ZT4Integrase / 0.887
4cjf RVNIntegrase / 0.858
4cfb OM3Integrase / 0.851
3zsx N44Integrase / 0.829
3zsw ZSWIntegrase / 0.819
4cea ZSWIntegrase / 0.819
4ces NFWIntegrase / 0.792
3zsz OM2Integrase / 0.791
4cjk H39Integrase / 0.789
4cj4 S3GIntegrase / 0.771
4cj5 4VWIntegrase / 0.768
4cje Q31Integrase / 0.759
4cgd 8P3Integrase / 0.737
4cf1 IY7Integrase / 0.713
4cgg K5QIntegrase / 0.709
4cjs L0YIntegrase / 0.707
4cf2 3GMIntegrase / 0.699
3zsq O4NIntegrase / 0.698
4ce9 O3NIntegrase / 0.692
3zsy OM3Integrase / 0.674
4cjr FYMIntegrase / 0.663
4ceo G0TIntegrase / 0.661
4cef D0TIntegrase / 0.650