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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4cgi NZL Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4cgi NZLIntegrase / 1.093
4cgj NZLIntegrase / 0.994
4cie Y7NIntegrase / 0.987
4cgh LOZIntegrase / 0.951
4chq CWUIntegrase / 0.932
4cjf RVNIntegrase / 0.917
4cju JNSIntegrase / 0.891
4cf0 O5UIntegrase / 0.885
4cgf UJ6Integrase / 0.882
4cf1 IY7Integrase / 0.877
4cf2 3GMIntegrase / 0.876
3zt2 ZT2Integrase / 0.866
3zt3 ZT4Integrase / 0.858
4cj3 E4FIntegrase / 0.852
4cfb OM3Integrase / 0.851
4cgg K5QIntegrase / 0.839
3zsx N44Integrase / 0.832
4cjr FYMIntegrase / 0.796
4cee B0TIntegrase / 0.790
4ceq QCHIntegrase / 0.785
3zsz OM2Integrase / 0.782
3zsw ZSWIntegrase / 0.780
4cea ZSWIntegrase / 0.780
4cec 2SSIntegrase / 0.778
4cgd 8P3Integrase / 0.776
4cif JDXIntegrase / 0.774
3zcm PX3Integrase / 0.769
4ce9 O3NIntegrase / 0.764
4cef D0TIntegrase / 0.763
3zsv ZSVIntegrase / 0.758
4ceb ZSVIntegrase / 0.758
4cf8 V7HIntegrase / 0.756
4cjs L0YIntegrase / 0.755
4cer VL4Integrase / 0.749
3zt1 OM1Integrase / 0.748
4cig X0PIntegrase / 0.742
4cfd S8YIntegrase / 0.738
4ck1 OM1Integrase / 0.738
4ceo G0TIntegrase / 0.735
3zsq O4NIntegrase / 0.733
3zsr O3NIntegrase / 0.728
4cez O3NIntegrase / 0.728
3zsy OM3Integrase / 0.711
3zt0 ZT0Integrase / 0.707
4cfa WOPIntegrase / 0.700
4cje Q31Integrase / 0.651