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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4cgf UJ6 Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4cgf UJ6Integrase / 0.988
4chq CWUIntegrase / 0.957
4cie Y7NIntegrase / 0.947
4cjf RVNIntegrase / 0.935
4cgh LOZIntegrase / 0.933
4cgj NZLIntegrase / 0.932
4cj3 E4FIntegrase / 0.931
3zt3 ZT4Integrase / 0.914
4cf0 O5UIntegrase / 0.908
4cju JNSIntegrase / 0.897
4cgi NZLIntegrase / 0.882
4cf1 IY7Integrase / 0.876
3zsx N44Integrase / 0.851
4cfb OM3Integrase / 0.851
4cgg K5QIntegrase / 0.847
3zt2 ZT2Integrase / 0.845
4cf2 3GMIntegrase / 0.839
4cjq VXOIntegrase / 0.833
4cee B0TIntegrase / 0.826
4cig X0PIntegrase / 0.811
3zsw ZSWIntegrase / 0.800
4cea ZSWIntegrase / 0.800
4ceq QCHIntegrase / 0.799
3zsz OM2Integrase / 0.794
3zcm PX3Integrase / 0.791
4cgd 8P3Integrase / 0.786
4ck1 OM1Integrase / 0.786
3zt1 OM1Integrase / 0.784
4cef D0TIntegrase / 0.781
4cjs L0YIntegrase / 0.778
4cec 2SSIntegrase / 0.775
4cer VL4Integrase / 0.775
4cf8 V7HIntegrase / 0.767
4cjr FYMIntegrase / 0.766
3zsq O4NIntegrase / 0.764
4cif JDXIntegrase / 0.748
3zsr O3NIntegrase / 0.729
4cez O3NIntegrase / 0.729
3zsy OM3Integrase / 0.725
4ce9 O3NIntegrase / 0.713
3zt0 ZT0Integrase / 0.685
4cjp 4D2Integrase / 0.674
4cj5 4VWIntegrase / 0.669
4cje Q31Integrase / 0.658
3qqh X0ACyclin-dependent kinase 2 2.7.11.22 0.657