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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4cfd S8Y Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4cfd S8YIntegrase / 0.914
4cfc 7NVIntegrase / 0.811
4cfa WOPIntegrase / 0.803
4cgg K5QIntegrase / 0.767
4cjk H39Integrase / 0.762
4cf1 IY7Integrase / 0.757
4cgh LOZIntegrase / 0.756
4cjq VXOIntegrase / 0.740
4cf0 O5UIntegrase / 0.738
4cgi NZLIntegrase / 0.738
3zt2 ZT2Integrase / 0.731
3zt3 ZT4Integrase / 0.730
4ces NFWIntegrase / 0.725
4ce9 O3NIntegrase / 0.700
3zsv ZSVIntegrase / 0.698
4ceb ZSVIntegrase / 0.698
4cjs L0YIntegrase / 0.692
4cj3 E4FIntegrase / 0.690
4cje Q31Integrase / 0.673
4cj5 4VWIntegrase / 0.658