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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4cfc 7NV Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4cfc 7NVIntegrase / 0.895
4cfa WOPIntegrase / 0.824
4cfd S8YIntegrase / 0.811
4cjk H39Integrase / 0.724
4cgg K5QIntegrase / 0.709
4cgd 8P3Integrase / 0.707
4cgh LOZIntegrase / 0.704
4cfb OM3Integrase / 0.697
3zt3 ZT4Integrase / 0.692
4cjf RVNIntegrase / 0.691
3zt2 ZT2Integrase / 0.690
4ces NFWIntegrase / 0.687
3zsx N44Integrase / 0.682
3zsy OM3Integrase / 0.660
4cj3 E4FIntegrase / 0.650