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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4cfb OM3 Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4cfb OM3Integrase / 1.066
3zsx N44Integrase / 1.058
4ce9 O3NIntegrase / 0.985
4cjs L0YIntegrase / 0.959
3zcm PX3Integrase / 0.948
4cig X0PIntegrase / 0.947
4ceq QCHIntegrase / 0.941
4cef D0TIntegrase / 0.940
3zsq O4NIntegrase / 0.933
4cjr FYMIntegrase / 0.930
4cer VL4Integrase / 0.919
3zsr O3NIntegrase / 0.916
4cez O3NIntegrase / 0.916
4cf8 V7HIntegrase / 0.912
4cec 2SSIntegrase / 0.909
4cif JDXIntegrase / 0.907
3zt0 ZT0Integrase / 0.891
3zsy OM3Integrase / 0.888
3zt1 OM1Integrase / 0.875
4ck1 OM1Integrase / 0.875
4cjf RVNIntegrase / 0.859
3zt3 ZT4Integrase / 0.856
4cie Y7NIntegrase / 0.856
4cju JNSIntegrase / 0.856
3zsv ZSVIntegrase / 0.854
3zt2 ZT2Integrase / 0.854
4ceb ZSVIntegrase / 0.854
4ceo G0TIntegrase / 0.854
4cgh LOZIntegrase / 0.852
4cgf UJ6Integrase / 0.851
4cgi NZLIntegrase / 0.851
4cgj NZLIntegrase / 0.851
4chq CWUIntegrase / 0.848
4cgd 8P3Integrase / 0.830
4ced 9NSIntegrase / 0.826
4ces NFWIntegrase / 0.826
4cf1 IY7Integrase / 0.826
4cf0 O5UIntegrase / 0.825
4cee B0TIntegrase / 0.824
3zsw ZSWIntegrase / 0.819
4cea ZSWIntegrase / 0.819
3zsz OM2Integrase / 0.816
4cgg K5QIntegrase / 0.815
4cjk H39Integrase / 0.803
4cjq VXOIntegrase / 0.800
4ck3 K1TIntegrase / 0.784
4cjp 4D2Integrase / 0.777
4cf2 3GMIntegrase / 0.770
4cfc 7NVIntegrase / 0.697
4cj3 E4FIntegrase / 0.679
4cj4 S3GIntegrase / 0.666
4cfa WOPIntegrase / 0.654