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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4cez O3N Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3zsr O3NIntegrase / 1.186
4cez O3NIntegrase / 1.186
4ceq QCHIntegrase / 1.115
4cjs L0YIntegrase / 1.050
4ce9 O3NIntegrase / 1.046
4cec 2SSIntegrase / 1.032
3zsv ZSVIntegrase / 1.026
4ceb ZSVIntegrase / 1.026
4cef D0TIntegrase / 1.020
4cf8 V7HIntegrase / 1.014
4cer VL4Integrase / 1.011
4ced 9NSIntegrase / 0.975
4ceo G0TIntegrase / 0.967
4cf1 IY7Integrase / 0.951
4cee B0TIntegrase / 0.933
3zsw ZSWIntegrase / 0.932
4cea ZSWIntegrase / 0.932
3zsx N44Integrase / 0.931
4cf0 O5UIntegrase / 0.925
4cfb OM3Integrase / 0.916
3zsy OM3Integrase / 0.913
4cig X0PIntegrase / 0.904
4cif JDXIntegrase / 0.872
4cf2 3GMIntegrase / 0.850
4ck1 OM1Integrase / 0.840
4ces NFWIntegrase / 0.815
4cgg K5QIntegrase / 0.815
4cgd 8P3Integrase / 0.792
4cgh LOZIntegrase / 0.766
4cjr FYMIntegrase / 0.755
3zsz OM2Integrase / 0.738
4cgf UJ6Integrase / 0.729
4chq CWUIntegrase / 0.729
4cgi NZLIntegrase / 0.728
3zt0 ZT0Integrase / 0.722
3zsq O4NIntegrase / 0.702
4cju JNSIntegrase / 0.683
3zt1 OM1Integrase / 0.680
4cjf RVNIntegrase / 0.675
3zcm PX3Integrase / 0.668