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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4cee B0T Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4cee B0TIntegrase / 1.115
3zsw ZSWIntegrase / 1.048
4cea ZSWIntegrase / 1.048
4cer VL4Integrase / 1.009
4cec 2SSIntegrase / 0.997
4ceq QCHIntegrase / 0.984
4cf0 O5UIntegrase / 0.973
4cef D0TIntegrase / 0.961
4ces NFWIntegrase / 0.960
4ced 9NSIntegrase / 0.959
4cf8 V7HIntegrase / 0.958
4cf1 IY7Integrase / 0.954
4ce9 O3NIntegrase / 0.948
3zsr O3NIntegrase / 0.933
4cez O3NIntegrase / 0.933
4ceo G0TIntegrase / 0.922
4cf2 3GMIntegrase / 0.874
4cgg K5QIntegrase / 0.844
4cj3 E4FIntegrase / 0.843
4cjs L0YIntegrase / 0.839
4cgh LOZIntegrase / 0.835
3zsx N44Integrase / 0.832
4cgf UJ6Integrase / 0.826
4cfb OM3Integrase / 0.824
4chq CWUIntegrase / 0.820
3zcm PX3Integrase / 0.808
3zsq O4NIntegrase / 0.807
4cgi NZLIntegrase / 0.790
3zt1 OM1Integrase / 0.775
4ck1 OM1Integrase / 0.775
4cjk H39Integrase / 0.772
4cif JDXIntegrase / 0.768
4ck3 K1TIntegrase / 0.766
4cgd 8P3Integrase / 0.759
3zsz OM2Integrase / 0.750
3zsy OM3Integrase / 0.742
3zsv ZSVIntegrase / 0.737
4ceb ZSVIntegrase / 0.737
3zt0 ZT0Integrase / 0.700
4cig X0PIntegrase / 0.698
4cjr FYMIntegrase / 0.688
4cju JNSIntegrase / 0.663