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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4cec 2SS Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4cec 2SSIntegrase / 1.161
4cer VL4Integrase / 1.141
4ceq QCHIntegrase / 1.068
4cf8 V7HIntegrase / 1.042
4ce9 O3NIntegrase / 1.033
4cef D0TIntegrase / 1.033
3zsr O3NIntegrase / 1.032
4cez O3NIntegrase / 1.032
3zsv ZSVIntegrase / 1.026
4ceb ZSVIntegrase / 1.026
3zsw ZSWIntegrase / 1.002
4cea ZSWIntegrase / 1.002
4cee B0TIntegrase / 0.997
4ceo G0TIntegrase / 0.989
4ces NFWIntegrase / 0.987
4ced 9NSIntegrase / 0.978
4cf0 O5UIntegrase / 0.961
4cf1 IY7Integrase / 0.947
3zsx N44Integrase / 0.910
4cfb OM3Integrase / 0.909
4cjr FYMIntegrase / 0.872
4cf2 3GMIntegrase / 0.854
4cjs L0YIntegrase / 0.850
4cgg K5QIntegrase / 0.840
4cif JDXIntegrase / 0.828
4ck1 OM1Integrase / 0.823
4cgh LOZIntegrase / 0.814
4cju JNSIntegrase / 0.811
3zt1 OM1Integrase / 0.808
4cjf RVNIntegrase / 0.806
4cie Y7NIntegrase / 0.799
4cgd 8P3Integrase / 0.788
4cgi NZLIntegrase / 0.778
4cgf UJ6Integrase / 0.775
3zsy OM3Integrase / 0.774
3zsz OM2Integrase / 0.764
4chq CWUIntegrase / 0.759
4cig X0PIntegrase / 0.684