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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4cax MYA Glycylpeptide N-tetradecanoyltransferase 2.3.1.97

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4cax MYAGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.825
4a31 MYAGlycylpeptide N-tetradecanoyltransferase / 1.264
4c2z MYAGlycylpeptide N-tetradecanoyltransferase 1 / 1.238
4cav MYAGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.236
4a32 MYAGlycylpeptide N-tetradecanoyltransferase / 1.235
4qbj NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.231
4a30 MYAGlycylpeptide N-tetradecanoyltransferase / 1.208
5ag6 MYAGlycylpeptide N-tetradecanoyltransferase / 1.175
5ag4 MYAGlycylpeptide N-tetradecanoyltransferase / 1.155
2yne NHWGlycylpeptide N-tetradecanoyltransferase / 1.144
4c2y MYAGlycylpeptide N-tetradecanoyltransferase 1 / 1.123
4bbh NHWGlycylpeptide N-tetradecanoyltransferase / 1.105
2ync YNCGlycylpeptide N-tetradecanoyltransferase / 1.092
4a2z MYAGlycylpeptide N-tetradecanoyltransferase / 1.092
4b10 NHWGlycylpeptide N-tetradecanoyltransferase / 1.091
4a33 MYAGlycylpeptide N-tetradecanoyltransferase / 1.087
5ag5 MYAGlycylpeptide N-tetradecanoyltransferase / 1.085
4b12 NHWGlycylpeptide N-tetradecanoyltransferase / 1.078
4ucn MYAGlycylpeptide N-tetradecanoyltransferase / 1.078
5ag7 MYAGlycylpeptide N-tetradecanoyltransferase / 1.075
4c68 NHWGlycylpeptide N-tetradecanoyltransferase / 1.074
5a27 MYAGlycylpeptide N-tetradecanoyltransferase / 1.068
4a95 NHWGlycylpeptide N-tetradecanoyltransferase / 1.059
2wsa MYAGlycylpeptide N-tetradecanoyltransferase / 1.045
4b11 NHWGlycylpeptide N-tetradecanoyltransferase / 1.044
4b13 NHWGlycylpeptide N-tetradecanoyltransferase / 1.042
5a28 MYAGlycylpeptide N-tetradecanoyltransferase / 1.037
4cgp MYAGlycylpeptide N-tetradecanoyltransferase / 1.020
2nmt NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.014
2wuu NHWGlycylpeptide N-tetradecanoyltransferase / 1.013
4c2x NHWGlycylpeptide N-tetradecanoyltransferase 2 / 1.003
4b14 NHWGlycylpeptide N-tetradecanoyltransferase / 0.969
1iid NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.807
2rs1 W84Genome polyprotein / 0.658
5kf1 COAPredicted acetyltransferase / 0.656
3sh0 SAXDitrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) 2.5.1.31 0.655
2qpy DHTAndrogen receptor / 0.654
3whc ST9Fatty acid metabolism regulator protein / 0.652