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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4cav MYA Glycylpeptide N-tetradecanoyltransferase 2.3.1.97

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4cav MYAGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.747
4cax MYAGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.236
4c2z MYAGlycylpeptide N-tetradecanoyltransferase 1 / 1.225
4qbj NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.220
2wsa MYAGlycylpeptide N-tetradecanoyltransferase / 1.129
4a33 MYAGlycylpeptide N-tetradecanoyltransferase / 1.114
4b10 NHWGlycylpeptide N-tetradecanoyltransferase / 1.103
5ag7 MYAGlycylpeptide N-tetradecanoyltransferase / 1.096
4a31 MYAGlycylpeptide N-tetradecanoyltransferase / 1.085
4cgp MYAGlycylpeptide N-tetradecanoyltransferase / 1.079
2wuu NHWGlycylpeptide N-tetradecanoyltransferase / 1.071
2ync YNCGlycylpeptide N-tetradecanoyltransferase / 1.061
4b11 NHWGlycylpeptide N-tetradecanoyltransferase / 1.052
4a30 MYAGlycylpeptide N-tetradecanoyltransferase / 1.049
5ag4 MYAGlycylpeptide N-tetradecanoyltransferase / 1.043
5ag5 MYAGlycylpeptide N-tetradecanoyltransferase / 1.040
4b14 NHWGlycylpeptide N-tetradecanoyltransferase / 1.036
4ucn MYAGlycylpeptide N-tetradecanoyltransferase / 1.032
4a32 MYAGlycylpeptide N-tetradecanoyltransferase / 1.031
4b13 NHWGlycylpeptide N-tetradecanoyltransferase / 1.020
4a2z MYAGlycylpeptide N-tetradecanoyltransferase / 1.012
4bbh NHWGlycylpeptide N-tetradecanoyltransferase / 1.012
5a27 MYAGlycylpeptide N-tetradecanoyltransferase / 1.004
5a28 MYAGlycylpeptide N-tetradecanoyltransferase / 1.001
4c2x NHWGlycylpeptide N-tetradecanoyltransferase 2 / 0.984
5ag6 MYAGlycylpeptide N-tetradecanoyltransferase / 0.981
4c68 NHWGlycylpeptide N-tetradecanoyltransferase / 0.925
1iid NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.908
4c2y MYAGlycylpeptide N-tetradecanoyltransferase 1 / 0.863
4a95 NHWGlycylpeptide N-tetradecanoyltransferase / 0.858
2yne NHWGlycylpeptide N-tetradecanoyltransferase / 0.852
4b12 NHWGlycylpeptide N-tetradecanoyltransferase / 0.847
2nmt NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.804
2qpy DHTAndrogen receptor / 0.661
3vgw NVZAvidin / 0.652