Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4c77 N01 Phenylacetone monooxygenase 1.14.13.92

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4c77 N01Phenylacetone monooxygenase 1.14.13.92 1.127
4ovi N01Phenylacetone monooxygenase 1.14.13.92 1.037
4d03 NAPPhenylacetone monooxygenase 1.14.13.92 0.962
2ylx NAPPhenylacetone monooxygenase 1.14.13.92 0.958
4d04 NAPPhenylacetone monooxygenase 1.14.13.92 0.947
2ylt NAPPhenylacetone monooxygenase 1.14.13.92 0.932
2ym2 NAPPhenylacetone monooxygenase 1.14.13.92 0.921
3gwd NAPCyclohexanone monooxygenase / 0.872
2ylr NAPPhenylacetone monooxygenase 1.14.13.92 0.858
2ym1 NAPPhenylacetone monooxygenase 1.14.13.92 0.852
2ylw NAPPhenylacetone monooxygenase 1.14.13.92 0.841
3up4 NAP2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.827
3uoz NAP2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.810
3up5 NAP2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.778
3uoy NAP2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.765
3s5w NAPL-ornithine N(5)-monooxygenase / 0.709
3gwf NAPCyclohexanone monooxygenase / 0.694
4gcm NAPThioredoxin reductase 1.8.1.9 0.661
2zzc NAPThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.660
2vq7 NAPPutative flavin-containing monooxygenase / 0.657
2wow NDPTrypanothione reductase / 0.654
3ean NAPThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.654
4b63 NAPL-ornithine N(5)-monooxygenase / 0.653