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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4c68 NHW Glycylpeptide N-tetradecanoyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4c68 NHWGlycylpeptide N-tetradecanoyltransferase / 1.827
4b13 NHWGlycylpeptide N-tetradecanoyltransferase / 1.738
4bbh NHWGlycylpeptide N-tetradecanoyltransferase / 1.719
2yne NHWGlycylpeptide N-tetradecanoyltransferase / 1.718
4a95 NHWGlycylpeptide N-tetradecanoyltransferase / 1.706
4b10 NHWGlycylpeptide N-tetradecanoyltransferase / 1.682
4b12 NHWGlycylpeptide N-tetradecanoyltransferase / 1.678
4b14 NHWGlycylpeptide N-tetradecanoyltransferase / 1.661
4b11 NHWGlycylpeptide N-tetradecanoyltransferase / 1.658
2ync YNCGlycylpeptide N-tetradecanoyltransferase / 1.615
4cgp MYAGlycylpeptide N-tetradecanoyltransferase / 1.483
2wsa MYAGlycylpeptide N-tetradecanoyltransferase / 1.464
5ag5 MYAGlycylpeptide N-tetradecanoyltransferase / 1.456
4a31 MYAGlycylpeptide N-tetradecanoyltransferase / 1.445
4a32 MYAGlycylpeptide N-tetradecanoyltransferase / 1.437
5ag4 MYAGlycylpeptide N-tetradecanoyltransferase / 1.436
4a2z MYAGlycylpeptide N-tetradecanoyltransferase / 1.408
4c2x NHWGlycylpeptide N-tetradecanoyltransferase 2 / 1.404
4ucn MYAGlycylpeptide N-tetradecanoyltransferase / 1.399
4c2z MYAGlycylpeptide N-tetradecanoyltransferase 1 / 1.397
4c2y MYAGlycylpeptide N-tetradecanoyltransferase 1 / 1.386
5ag6 MYAGlycylpeptide N-tetradecanoyltransferase / 1.376
5a28 MYAGlycylpeptide N-tetradecanoyltransferase / 1.343
5a27 MYAGlycylpeptide N-tetradecanoyltransferase / 1.322
5ag7 MYAGlycylpeptide N-tetradecanoyltransferase / 1.298
4a30 MYAGlycylpeptide N-tetradecanoyltransferase / 1.285
2wuu NHWGlycylpeptide N-tetradecanoyltransferase / 1.258
4a33 MYAGlycylpeptide N-tetradecanoyltransferase / 1.228
4cax MYAGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.074
2nmt NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.032
1iid NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.973
4cav MYAGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.925
4qbj NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.787
2q4v ACODiamine acetyltransferase 2 2.3.1.57 0.682
4lch 1WNUDP-3-O-acyl-N-acetylglucosamine deacetylase / 0.671
4i1r LZUMucosa-associated lymphoid tissue lymphoma translocation protein 1 3.4.22 0.669
2uyw BTNAvd protein / 0.657
2rtq IMIStreptavidin / 0.656
1nqm BTNStreptavidin / 0.652
1n9m BTNStreptavidin / 0.651