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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4c2y MYA Glycylpeptide N-tetradecanoyltransferase 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4c2y MYAGlycylpeptide N-tetradecanoyltransferase 1 / 1.738
4c2z MYAGlycylpeptide N-tetradecanoyltransferase 1 / 1.677
4a95 NHWGlycylpeptide N-tetradecanoyltransferase / 1.587
4a31 MYAGlycylpeptide N-tetradecanoyltransferase / 1.584
2ync YNCGlycylpeptide N-tetradecanoyltransferase / 1.575
2wsa MYAGlycylpeptide N-tetradecanoyltransferase / 1.569
4cgp MYAGlycylpeptide N-tetradecanoyltransferase / 1.550
4a30 MYAGlycylpeptide N-tetradecanoyltransferase / 1.536
4c2x NHWGlycylpeptide N-tetradecanoyltransferase 2 / 1.533
2yne NHWGlycylpeptide N-tetradecanoyltransferase / 1.528
5ag5 MYAGlycylpeptide N-tetradecanoyltransferase / 1.525
4b12 NHWGlycylpeptide N-tetradecanoyltransferase / 1.519
4a33 MYAGlycylpeptide N-tetradecanoyltransferase / 1.510
4ucn MYAGlycylpeptide N-tetradecanoyltransferase / 1.507
4a32 MYAGlycylpeptide N-tetradecanoyltransferase / 1.504
4bbh NHWGlycylpeptide N-tetradecanoyltransferase / 1.504
5a28 MYAGlycylpeptide N-tetradecanoyltransferase / 1.480
5ag4 MYAGlycylpeptide N-tetradecanoyltransferase / 1.473
5ag7 MYAGlycylpeptide N-tetradecanoyltransferase / 1.473
5ag6 MYAGlycylpeptide N-tetradecanoyltransferase / 1.472
2wuu NHWGlycylpeptide N-tetradecanoyltransferase / 1.463
4a2z MYAGlycylpeptide N-tetradecanoyltransferase / 1.454
4b11 NHWGlycylpeptide N-tetradecanoyltransferase / 1.449
4b14 NHWGlycylpeptide N-tetradecanoyltransferase / 1.444
4b13 NHWGlycylpeptide N-tetradecanoyltransferase / 1.418
4c68 NHWGlycylpeptide N-tetradecanoyltransferase / 1.386
4b10 NHWGlycylpeptide N-tetradecanoyltransferase / 1.290
5a27 MYAGlycylpeptide N-tetradecanoyltransferase / 1.276
4cax MYAGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.123
2nmt NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.032
4qbj NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.902
4cav MYAGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.863
1iid NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.861
1pua COAHAT A1 / 0.669
5kf8 COAPredicted acetyltransferase / 0.667
2zsc BTNTamavidin2 / 0.666
2prb COAAminoglycoside 6-N-acetyltransferase type Ib11 / 0.665
4lch 1WNUDP-3-O-acyl-N-acetylglucosamine deacetylase / 0.661
1nc9 IMIStreptavidin / 0.660
4cry ACOPanD regulatory factor / 0.657
4bx7 B4FStreptavidin / 0.656
1s0x C3SNuclear receptor ROR-alpha / 0.653
3ha7 B32Hydroxymycolate synthase MmaA4 2.1.1 0.651
3gkj HC3Niemann-Pick C1 protein / 0.650