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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4c13 UML UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4c13 UMLUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase / 1.537
1uuo BRFDihydroorotate dehydrogenase (quinone), mitochondrial 1.3.5.2 0.686
4i1n FOLDihydrofolate reductase 1.5.1.3 0.660
4x5g FOLDihydrofolate reductase 1.5.1.3 0.657
3dds 26BGlycogen phosphorylase, liver form 2.4.1.1 0.654
1hfp MOTDihydrofolate reductase 1.5.1.3 0.653
2d0k FOLDihydrofolate reductase 1.5.1.3 0.650