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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4bzc T8T Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4bzc T8TDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 1.098
4tny DTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.852
4tnp DCPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.849
4to4 DGTDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.842
4to3 DGTDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.830
4tnr DTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.829
4qfy DGTDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.828
4tnz DTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.826
4tnx DGTDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.755
4to5 TTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.743
4to0 DTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.738
4to6 DTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.727
4tnq TTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.726
4zwg DTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.724
4qfx DTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.701
5l3s GNPSignal recognition particle receptor FtsY / 0.683
3q9l ATPSeptum site-determining protein MinD / 0.673
4kh0 ATPAspartate carbamoyltransferase regulatory chain {ECO:0000256|HAMAP-Rule:MF_00002} / 0.667
5erm 210Fusicoccadiene synthase 4.2.3.43 0.667
1bmf ANPATP synthase subunit alpha, mitochondrial / 0.666
1bmf ANPATP synthase subunit beta, mitochondrial 3.6.3.14 0.666
4lrl TTPHD domain protein / 0.663
4ga3 4GAFarnesyl pyrophosphate synthase 2.5.1.10 0.656
1bxr ANPCarbamoyl-phosphate synthase large chain / 0.651
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.651
1esn ANPPantothenate kinase 2.7.1.33 0.650