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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4bpr FAD Ferredoxin--NADP reductase 1.18.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4bpr FADFerredoxin--NADP reductase 1.18.1.2 1.267
1que FADFerredoxin--NADP reductase 1.18.1.2 1.218
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 1.214
1bjk FADFerredoxin--NADP reductase 1.18.1.2 1.204
1qgy FADFerredoxin--NADP reductase 1.18.1.2 1.189
1ogi FADFerredoxin--NADP reductase 1.18.1.2 1.187
1go2 FADFerredoxin--NADP reductase 1.18.1.2 1.185
1e63 FADFerredoxin--NADP reductase 1.18.1.2 1.184
3zbt FADFerredoxin--NADP reductase 1.18.1.2 1.182
4c43 FADFerredoxin--NADP reductase 1.18.1.2 1.163
1h85 FADFerredoxin--NADP reductase 1.18.1.2 1.158
1ogj FADFerredoxin--NADP reductase 1.18.1.2 1.151
1e64 FADFerredoxin--NADP reductase 1.18.1.2 1.150
1w35 FADFerredoxin--NADP reductase 1.18.1.2 1.150
1b2r FADFerredoxin--NADP reductase 1.18.1.2 1.139
1h42 FADFerredoxin--NADP reductase 1.18.1.2 1.136
1w34 FADFerredoxin--NADP reductase 1.18.1.2 1.133
1e62 FADFerredoxin--NADP reductase 1.18.1.2 1.131
2vyq FADFerredoxin--NADP reductase 1.18.1.2 1.131
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.130
2b5o FADFerredoxin--NADP reductase 1.18.1.2 1.130
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.126
3vo2 FADFerredoxin--NADP reductase / 1.126
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.122
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 1.118
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.117
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.117
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 1.113
1qgz FADFerredoxin--NADP reductase 1.18.1.2 1.112
1gaw FADFerredoxin / 1.107
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.095
1gjr FADFerredoxin--NADP reductase 1.18.1.2 1.080
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.079
1gaq FADFerredoxin / 1.048
2rc5 FADFerredoxin--NADP reductase / 1.046
1sm4 FADFerredoxin--NADP reductase / 1.042
2rc6 FADFerredoxin--NADP reductase / 1.031
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.011
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.990
3w5u FADFerredoxin / 0.984
1ewy FADFerredoxin--NADP reductase 1.18.1.2 0.944
3qfs FADNADPH--cytochrome P450 reductase / 0.935
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.922
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.876
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.876
1ja1 FADNADPH--cytochrome P450 reductase / 0.874
4yaf FADNADPH--cytochrome P450 reductase / 0.871
4y9u FADNADPH--cytochrome P450 reductase / 0.862
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.860
4yau FADNADPH--cytochrome P450 reductase / 0.860
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.857
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.847
3qfc FADNADPH--cytochrome P450 reductase / 0.845
1tll FADNitric oxide synthase, brain 1.14.13.39 0.844
4y7c FADNADPH--cytochrome P450 reductase / 0.843
3qe2 FADNADPH--cytochrome P450 reductase / 0.842
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.835
1ja0 FADNADPH--cytochrome P450 reductase / 0.833
3qft FADNADPH--cytochrome P450 reductase / 0.828
3ojx FADNADPH--cytochrome P450 reductase / 0.818
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.813
1j9z FADNADPH--cytochrome P450 reductase / 0.798
3fpk FADFerredoxin-NADP reductase / 0.790
1amo FADNADPH--cytochrome P450 reductase / 0.789
4yao FADNADPH--cytochrome P450 reductase / 0.786
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.785
4y9r FADNADPH--cytochrome P450 reductase / 0.782
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.773
2pia FMNPhthalate dioxygenase reductase / 0.769
2eix FADNADH-cytochrome b5 reductase / 0.767
3ojw FADNADPH--cytochrome P450 reductase / 0.761
1cqx FADFlavohemoprotein / 0.759
3qfr FADNADPH--cytochrome P450 reductase / 0.755
3crz FADFerredoxin--NADP+ reductase / 0.750
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.749
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.744
2qdx FADFerredoxin--NADP+ reductase / 0.743
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.741
2bn4 FADNADPH--cytochrome P450 reductase / 0.736
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.731
2bf4 FADNADPH--cytochrome P450 reductase / 0.725
2gpj FADSiderophore-interacting protein / 0.722
4fk8 FADFerredoxin--NADP reductase / 0.718
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.713
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.709
4k1x FADNADPH:ferredoxin reductase / 0.704
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.694
2bpo FADNADPH--cytochrome P450 reductase / 0.693
4hmx FMNPyridoxamine 5'-phosphate oxidase / 0.692
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.682
1ndh FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.679
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.678
3e4v FMNUncharacterized protein / 0.670
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 0.668
4wuj FMNGlycoside hydrolase family 15, cellulose signaling associated protein envoy / 0.663
4z0p NDPNAD-dependent dehydrogenase / 0.662
4f07 FADStyrene monooxygenase component 2 / 0.659
1gvh FADFlavohemoprotein / 0.657
2e83 FMNFMN-binding protein / 0.652
3a6r FMNFMN-binding protein / 0.652
1a8p FADFerredoxin--NADP reductase / 0.651
3lov FADProtoporphyrinogen oxidase / 0.651
3ka7 FADPutative oxidoreductase / 0.650