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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4bmz MTA Aminodeoxyfutalosine nucleosidase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4bmz MTAAminodeoxyfutalosine nucleosidase / 1.089
3eei MTM5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase / 0.925
1nc1 MTH5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 3.2.2.9 0.895
1y6r MTM5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 3.2.2.9 0.894
1zos MTM5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase / 0.877
4wkb TDI5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase / 0.781
1je1 GMPPurine nucleoside phosphorylase / 0.749
1pr0 NOSPurine nucleoside phosphorylase DeoD-type / 0.740
4ts9 FMCPurine nucleoside phosphorylase DeoD-type / 0.732
3fow IMHPurine nucleoside phosphorylase / 0.729
3dp9 BIG5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase / 0.727
3uaz NOSPurine nucleoside phosphorylase DeoD-type / 0.726
1nw4 IMHPurine nucleoside phosphorylase / 0.724
2bsx NOSPurine nucleoside phosphorylase / 0.711
1pk9 2FAPurine nucleoside phosphorylase DeoD-type / 0.710
4dae 6CRPurine nucleoside phosphorylase DeoD-type 2.4.2.1 0.708
3uay ADNPurine nucleoside phosphorylase DeoD-type / 0.707
1odi ADNPurine nucleoside phosphorylase / 0.697
1sd2 MTHS-methyl-5'-thioadenosine phosphorylase / 0.691
1a69 FMBPurine nucleoside phosphorylase DeoD-type / 0.686
4tta FMCPurine nucleoside phosphorylase DeoD-type / 0.682
1sd1 FMCS-methyl-5'-thioadenosine phosphorylase / 0.679
1k9s FM1Purine nucleoside phosphorylase DeoD-type / 0.678
3f8w ADNPurine nucleoside phosphorylase / 0.677
4dan 2FAPurine nucleoside phosphorylase DeoD-type 2.4.2.1 0.673
4ttj FMCPurine nucleoside phosphorylase DeoD-type / 0.671
4tti FMCPurine nucleoside phosphorylase DeoD-type / 0.658
2iw1 U2FLipopolysaccharide core biosynthesis protein RfaG 2.4 0.657
1q1g MTIPurine nucleoside phosphorylase / 0.656
1f3l SAHProtein arginine N-methyltransferase 3 / 0.655
1pr5 TBNPurine nucleoside phosphorylase DeoD-type / 0.655
3zid GDPTubulin-like protein CetZ / 0.655
4ts3 FMCPurine nucleoside phosphorylase DeoD-type / 0.655
2a14 SAHIndolethylamine N-methyltransferase 2.1.1.49 0.654
2bzg SAHThiopurine S-methyltransferase 2.1.1.67 0.654
1h6d NDPGlucose--fructose oxidoreductase 1.1.99.28 0.653
2c9o ADPRuvB-like 1 3.6.4.12 0.652
4mwz SAMPhosphoethanolamine N-methyltransferase, putative / 0.652