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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4bl5 GFB GDP-L-fucose synthase 1.1.1.271

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4bl5 GFBGDP-L-fucose synthase 1.1.1.271 1.359
4b8z GDPGDP-L-fucose synthase 1.1.1.271 0.868
4b8w GDPGDP-L-fucose synthase 1.1.1.271 0.721
4ees FMNPhototropin-2 2.7.11.1 0.683
1z7e UGABifunctional polymyxin resistance protein ArnA / 0.664
2pdt FADVivid PAS protein VVD / 0.660
3tpt ADPSerine/threonine-protein kinase toxin HipA / 0.660
1odn APVIsopenicillin N synthase 1.21.3.1 0.658
3zzh NLGProtein ARG5,6, mitochondrial 2.7.2.8 0.657
5dju FMNNPH1-2 / 0.653
2gn9 UPGUDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.652