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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4bj8 BTN Avidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4bj8 BTNAvidin / 1.064
2c4i BTNAvidin / 0.848
2izg BTNStreptavidin / 0.835
2rte BTNStreptavidin / 0.835
1y52 BTNAvidin-related protein 4/5 / 0.830
2izh BTNStreptavidin / 0.830
2fhl BNIAvidin-related protein 4/5 / 0.828
2fhn BNIAvidin-related protein 4/5 / 0.826
2zsc BTNTamavidin2 / 0.826
2rtg BTNStreptavidin / 0.825
2rtf BTNStreptavidin / 0.823
3ry2 BTNStreptavidin / 0.823
1n9m BTNStreptavidin / 0.820
2y3f BTNStreptavidin / 0.820
1swe BTNStreptavidin / 0.818
2uyw BTNAvd protein / 0.816
4bcs BTNAvidin-related protein 4/5 / 0.815
2izj BTNStreptavidin / 0.814
2rtd BTNStreptavidin / 0.809
4yvb BTNStreptavidin / 0.809
2izf BTNStreptavidin / 0.808
3wyq BTNStreptavidin / 0.804
3t2w BTNAvidin/streptavidin / 0.803
1mk5 BTNStreptavidin / 0.798
3wyp BSOStreptavidin / 0.796
4gda BTNStreptavidin / 0.790
3rdo BTNStreptavidin / 0.788
4dne DTBStreptavidin / 0.785
3ew2 BTNHypothetical conserved protein / 0.780
2izi BTNStreptavidin / 0.776
1ndj BTNStreptavidin / 0.772
3wzn BTNStreptavidin / 0.769
1swp BTQStreptavidin / 0.767
1luq BTNStreptavidin / 0.760
1n43 BTNStreptavidin / 0.758
3vhi VHIAvidin / 0.755
1swt BTNStreptavidin / 0.748
1ij8 BNIAvidin / 0.747
3vgw NVZAvidin / 0.746
3rdq DTBStreptavidin / 0.743
1stp BTNStreptavidin / 0.741
2avi BTNAvidin / 0.741
4ggz BTNBll1558 protein / 0.741
1swg BTNStreptavidin / 0.740
4z28 BTNHoefavidin / 0.740
1df8 BTNStreptavidin / 0.738
2izl IMIStreptavidin / 0.738
1i9h BNIStreptavidin / 0.737
4gd9 BTNStreptavidin / 0.734
1swr BTNStreptavidin / 0.730
2uz2 BTNAvd protein / 0.730
1swp BTNStreptavidin / 0.728
2jgs BTNAvidin / 0.728
1swn BTNStreptavidin / 0.725
2rtm IMIStreptavidin / 0.722
1lcz BH7Streptavidin / 0.712
2rtp IMIStreptavidin / 0.712
1rxh BNIStreptavidin / 0.711
1nqm BTNStreptavidin / 0.708
1rxj BNIStreptavidin / 0.706
1lcw SHMStreptavidin / 0.704
1mep BTNStreptavidin / 0.703
2rto IMIStreptavidin / 0.697
1swd BTNStreptavidin / 0.695
1nc9 IMIStreptavidin / 0.693
2rtl IMIStreptavidin / 0.683
4bx7 B4FStreptavidin / 0.679
1avd BTNAvidin / 0.662
3zux TCHTransporter / 0.657
3zuy TCHTransporter / 0.657