Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4bby FAD Alkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4bby FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 1.545
4bca FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 1.446
4bc7 FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 1.391
2uuv FADAlkyldihydroxyacetonephosphate synthase 2.5.1.26 1.047
4jay FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.997
2gqt FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.959
3pm9 FADPutative oxidoreductase / 0.948
4jb1 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.939
1hsk FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.925
3tx1 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.921
4pyt FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.887
1f0x FADD-lactate dehydrogenase 1.1.1.28 0.875
3i99 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.869
4zoh FADPutative oxidoreductase FAD-binding subunit / 0.864
1mbt FADUDP-N-acetylenolpyruvoylglucosamine reductase 1.3.1.98 0.858
4ysw FADXanthine dehydrogenase/oxidase / 0.829
4aut FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.816
1wyg FADXanthine dehydrogenase/oxidase / 0.799
4fdn FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.735
4feh FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.735
4fdp FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.699
4f4q FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.690
1oya FMNNADPH dehydrogenase 1 1.6.99.1 0.684
3t50 FMNBlue-light-activated histidine kinase 2.7.13.3 0.684
1icq FMN12-oxophytodienoate reductase 1 1.3.1.42 0.683
4e2d FMNDehydrogenase / 0.682
4rnv FMNNADPH dehydrogenase 1 1.6.99.1 0.681
4h6k FMNNADPH dehydrogenase 1 1.6.99.1 0.679
4k7y FMNNADPH dehydrogenase 1 1.6.99.1 0.679
4tmc FMNOld yellow enzyme / 0.678
1icp FMN12-oxophytodienoate reductase 1 1.3.1.42 0.677
1owo FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.676
1bwl FMNNADPH dehydrogenase 1 1.6.99.1 0.674
1ps9 FAD2,4-dienoyl-CoA reductase 1.3.1.34 0.671
4r38 RBFBlue-light-activated histidine kinase 2 2.7.13.3 0.670
3n19 FNRXenobiotic reductase / 0.666
5cpm FNRNADH:flavin oxidoreductase / 0.666
1bwk FMNNADPH dehydrogenase 1 1.6.99.1 0.663
1ofd FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.663
2q3r FMN12-oxophytodienoate reductase 1 1.3.1.42 0.663
4tmb FMNOld yellow enzyme / 0.663
1vhn FMNtRNA-dihydrouridine synthase / 0.662
1iqr FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.661
2j08 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.660
2gou FMNNADH:flavin oxidoreductase Sye1 / 0.659
4jic FMNGTN Reductase / 0.659
1h7w FMNDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.658
2gqa FMNNADH:flavin oxidoreductase Sye1 / 0.658
2wq6 FADRE11660p / 0.657
2wq7 FADRE11660p / 0.657
2zrv FNRIsopentenyl-diphosphate delta-isomerase / 0.655
2hsa FMN12-oxophytodienoate reductase 3 1.3.1.42 0.652
3kap FMNFlavodoxin / 0.652