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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4bbh NHW Glycylpeptide N-tetradecanoyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4bbh NHWGlycylpeptide N-tetradecanoyltransferase / 1.819
4b11 NHWGlycylpeptide N-tetradecanoyltransferase / 1.742
2yne NHWGlycylpeptide N-tetradecanoyltransferase / 1.731
4a95 NHWGlycylpeptide N-tetradecanoyltransferase / 1.721
4c68 NHWGlycylpeptide N-tetradecanoyltransferase / 1.719
4b10 NHWGlycylpeptide N-tetradecanoyltransferase / 1.703
4b13 NHWGlycylpeptide N-tetradecanoyltransferase / 1.703
4b14 NHWGlycylpeptide N-tetradecanoyltransferase / 1.685
4b12 NHWGlycylpeptide N-tetradecanoyltransferase / 1.681
2ync YNCGlycylpeptide N-tetradecanoyltransferase / 1.664
4c2z MYAGlycylpeptide N-tetradecanoyltransferase 1 / 1.526
4c2y MYAGlycylpeptide N-tetradecanoyltransferase 1 / 1.504
4a31 MYAGlycylpeptide N-tetradecanoyltransferase / 1.486
4cgp MYAGlycylpeptide N-tetradecanoyltransferase / 1.479
2wuu NHWGlycylpeptide N-tetradecanoyltransferase / 1.465
2wsa MYAGlycylpeptide N-tetradecanoyltransferase / 1.452
4a2z MYAGlycylpeptide N-tetradecanoyltransferase / 1.451
4a30 MYAGlycylpeptide N-tetradecanoyltransferase / 1.442
4a32 MYAGlycylpeptide N-tetradecanoyltransferase / 1.438
5a27 MYAGlycylpeptide N-tetradecanoyltransferase / 1.432
5ag4 MYAGlycylpeptide N-tetradecanoyltransferase / 1.414
4ucn MYAGlycylpeptide N-tetradecanoyltransferase / 1.394
5ag6 MYAGlycylpeptide N-tetradecanoyltransferase / 1.388
4c2x NHWGlycylpeptide N-tetradecanoyltransferase 2 / 1.366
5ag5 MYAGlycylpeptide N-tetradecanoyltransferase / 1.363
5ag7 MYAGlycylpeptide N-tetradecanoyltransferase / 1.360
4a33 MYAGlycylpeptide N-tetradecanoyltransferase / 1.347
5a28 MYAGlycylpeptide N-tetradecanoyltransferase / 1.313
4cax MYAGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.105
2nmt NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.103
4cav MYAGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.012
1iid NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.010
4qbj NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.913
3pgp ACOUncharacterized protein / 0.683
4bcs BTNAvidin-related protein 4/5 / 0.661
3ew2 BTNHypothetical conserved protein / 0.656
4lch 1WNUDP-3-O-acyl-N-acetylglucosamine deacetylase / 0.655