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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ban M6S Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ban M6SProthrombin 3.4.21.5 1.186
4bah MELProthrombin 3.4.21.5 1.143
4bam MM9Prothrombin 3.4.21.5 1.141
4bak M67Prothrombin 3.4.21.5 1.139
4bao MVFProthrombin 3.4.21.5 1.124
1k22 MELProthrombin 3.4.21.5 1.119
4baq M4ZProthrombin 3.4.21.5 1.083
2znk 31UProthrombin 3.4.21.5 0.923
2zhq 27UProthrombin 3.4.21.5 0.916
2zg0 50UProthrombin 3.4.21.5 0.908
2zi2 24UProthrombin 3.4.21.5 0.892
2anm CDOProthrombin 3.4.21.5 0.888
2zfq 45UProthrombin 3.4.21.5 0.884
2zda 32UProthrombin 3.4.21.5 0.883
2zhf 49UProthrombin 3.4.21.5 0.879
2ziq 26UProthrombin 3.4.21.5 0.842
1ypm RA4Prothrombin 3.4.21.5 0.838
2zgx 29UProthrombin 3.4.21.5 0.831
3utu 1TSProthrombin 3.4.21.5 0.831
2zfr 46UProthrombin 3.4.21.5 0.828
1riw OSCProthrombin 3.4.21.5 0.827
1nt1 T76Prothrombin 3.4.21.5 0.814
2a2x NA9Prothrombin 3.4.21.5 0.809
1ta6 177Prothrombin 3.4.21.5 0.806
2bdy UNBProthrombin 3.4.21.5 0.804
3biv 11UProthrombin 3.4.21.5 0.796
3plp BBACationic trypsin 3.4.21.4 0.794
2gde SN3Prothrombin 3.4.21.5 0.793
1k21 IGNProthrombin 3.4.21.5 0.792
1lpk CBBCoagulation factor X 3.4.21.6 0.790
1ypl RA8Prothrombin 3.4.21.5 0.789
3hat GLY_VAL_ARG_RNGProthrombin 3.4.21.5 0.789
1nzq 162Prothrombin 3.4.21.5 0.788
2zhw 12UProthrombin 3.4.21.5 0.782
1wtg 3BPCoagulation factor VII 3.4.21.21 0.776
1o0d 163Prothrombin 3.4.21.5 0.774
3biu 10UProthrombin 3.4.21.5 0.773
2v3h I25Prothrombin 3.4.21.5 0.771
4ayv 9MQProthrombin 3.4.21.5 0.766
1ype UIPProthrombin 3.4.21.5 0.765
2cf8 ESHProthrombin 3.4.21.5 0.765
4ayy 9MXProthrombin 3.4.21.5 0.762
2zf0 51UProthrombin 3.4.21.5 0.757
2v3o I26Prothrombin 3.4.21.5 0.756
1wqv PSMCoagulation factor VII 3.4.21.21 0.754
2zff 53UProthrombin 3.4.21.5 0.751
3p17 99PProthrombin 3.4.21.5 0.750
1ypk CCRProthrombin 3.4.21.5 0.745
2cn0 F25Prothrombin 3.4.21.5 0.745
3v0x ANHCationic trypsin 3.4.21.4 0.743
1ypj UIBProthrombin 3.4.21.5 0.740
3qwc 98PProthrombin 3.4.21.5 0.737
1c4u IH1Prothrombin 3.4.21.5 0.736
2zdv 37UProthrombin 3.4.21.5 0.736
2cf9 348Prothrombin 3.4.21.5 0.732
2zgb 21UProthrombin 3.4.21.5 0.729
1ghv 120Prothrombin 3.4.21.5 0.727
1ae8 AZLProthrombin 3.4.21.5 0.726
1c5n ESIProthrombin 3.4.21.5 0.725
3dhk 23UProthrombin 3.4.21.5 0.720
3qto 10PProthrombin 3.4.21.5 0.719
1ta2 176Prothrombin 3.4.21.5 0.718
4ax9 N5NProthrombin 3.4.21.5 0.717
4az2 9MUProthrombin 3.4.21.5 0.717
2zc9 22UProthrombin 3.4.21.5 0.714
1zsk 421Coagulation factor XI 3.4.21.27 0.711
3dux 64UProthrombin 3.4.21.5 0.709
2c4f GILCoagulation factor VII 3.4.21.21 0.708
5cmx 0G6Prothrombin 3.4.21.5 0.706
2zhe 13UProthrombin 3.4.21.5 0.703
1wv7 5PICoagulation factor VII 3.4.21.21 0.700
1sl3 170Prothrombin 3.4.21.5 0.696
1ypg UIRProthrombin 3.4.21.5 0.695
3qtv 06PProthrombin 3.4.21.5 0.693
1mue CDDProthrombin 3.4.21.5 0.688
2zp0 PI0Coagulation factor VII 3.4.21.21 0.688
1vja 7INUrokinase-type plasminogen activator 3.4.21.73 0.687
1xm1 GAHProthrombin 3.4.21.5 0.687
1c1u BAIProthrombin 3.4.21.5 0.684
2zfp 19UProthrombin 3.4.21.5 0.682
1mu8 CDBProthrombin 3.4.21.5 0.676
3c1k T15Prothrombin 3.4.21.5 0.675
1nm6 L86Prothrombin 3.4.21.5 0.674
1lqd CMICoagulation factor X 3.4.21.6 0.673
1f92 UKPUrokinase-type plasminogen activator 3.4.21.73 0.671
3eq0 2TSProthrombin 3.4.21.5 0.670
2r2m I50Prothrombin 3.4.21.5 0.667
3c27 DKKProthrombin 3.4.21.5 0.665
1oyt FSNProthrombin 3.4.21.5 0.662
1vzq SHYProthrombin 3.4.21.5 0.661
1z71 L17Prothrombin 3.4.21.5 0.661
1mu6 CDAProthrombin 3.4.21.5 0.660
1sb1 165Prothrombin 3.4.21.5 0.660
2y82 930Coagulation factor X 3.4.21.6 0.658
1zrb 062Prothrombin 3.4.21.5 0.657
1ny2 ARG_PRO_PRO_GLYProthrombin 3.4.21.5 0.654