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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4b7s QLE Cytochrome P450 monooxygenase PikC

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4b7s QLECytochrome P450 monooxygenase PikC / 1.023
2cd8 PXICytochrome P450 monooxygenase PikC / 0.762
2vzm NRBCytochrome P450 monooxygenase PikC / 0.758
2c6h PXICytochrome P450 monooxygenase PikC / 0.752
4e5i 0N9Polymerase acidic protein / 0.744
2ca0 PXICytochrome P450 monooxygenase PikC / 0.704
3zk5 Z18Cytochrome P450 monooxygenase PikC / 0.688
4b7d QLECytochrome P450 monooxygenase PikC / 0.684
4e5f 0N7Polymerase acidic protein / 0.660