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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4b6r 3DQ 3-dehydroquinate dehydratase 4.2.1.10

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4b6r 3DQ3-dehydroquinate dehydratase 4.2.1.10 1.095
4b6s 2HN3-dehydroquinate dehydratase 4.2.1.10 0.885
2y71 CB63-dehydroquinate dehydratase 4.2.1.10 0.715
2xb9 XNW3-dehydroquinate dehydratase 4.2.1.10 0.708
3n8n N883-dehydroquinate dehydratase 4.2.1.10 0.695
2wks CB63-dehydroquinate dehydratase 4.2.1.10 0.693
4v0s 2HN3-dehydroquinate dehydratase 4.2.1.10 0.659
3phj DHKShikimate dehydrogenase (NADP(+)) / 0.655