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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4b52 RDF Bacillolysin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4b52 RDFBacillolysin / 1.121
3t87 UBZThermolysin 3.4.24.27 0.873
4h57 0PJThermolysin 3.4.24.27 0.861
3t8c UBWThermolysin 3.4.24.27 0.844
4d9w X32Thermolysin 3.4.24.27 0.844
4tmn 0PKThermolysin 3.4.24.27 0.835
3t8d UBVThermolysin 3.4.24.27 0.826
3t74 UBYThermolysin 3.4.24.27 0.808
2tmn 0FAThermolysin 3.4.24.27 0.803
6tmn 0PIThermolysin 3.4.24.27 0.798
4cth RDFNeprilysin / 0.792
3t8h UBSThermolysin 3.4.24.27 0.785
3fv4 1U4Thermolysin 3.4.24.27 0.780
3fvp UB2Thermolysin 3.4.24.27 0.767
3zuk RDFEndopeptidase, peptidase family M13 / 0.750
4zr5 RDFNeprilysin / 0.696
1u4g HPIElastase 3.4.24.26 0.683
3dwb RDFEndothelin-converting enzyme 1 3.4.24.71 0.668
1r1j OIRNeprilysin / 0.652
3mtw M3RXaa-Pro dipeptidase, putative / 0.651