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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4b14 NHW Glycylpeptide N-tetradecanoyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4b14 NHWGlycylpeptide N-tetradecanoyltransferase / 1.784
4bbh NHWGlycylpeptide N-tetradecanoyltransferase / 1.685
4b13 NHWGlycylpeptide N-tetradecanoyltransferase / 1.675
4a95 NHWGlycylpeptide N-tetradecanoyltransferase / 1.674
4c68 NHWGlycylpeptide N-tetradecanoyltransferase / 1.661
2yne NHWGlycylpeptide N-tetradecanoyltransferase / 1.659
4b11 NHWGlycylpeptide N-tetradecanoyltransferase / 1.653
4b10 NHWGlycylpeptide N-tetradecanoyltransferase / 1.652
4b12 NHWGlycylpeptide N-tetradecanoyltransferase / 1.635
4cgp MYAGlycylpeptide N-tetradecanoyltransferase / 1.559
4a31 MYAGlycylpeptide N-tetradecanoyltransferase / 1.539
5ag4 MYAGlycylpeptide N-tetradecanoyltransferase / 1.536
2ync YNCGlycylpeptide N-tetradecanoyltransferase / 1.533
5ag5 MYAGlycylpeptide N-tetradecanoyltransferase / 1.515
4a32 MYAGlycylpeptide N-tetradecanoyltransferase / 1.482
5a27 MYAGlycylpeptide N-tetradecanoyltransferase / 1.473
4a2z MYAGlycylpeptide N-tetradecanoyltransferase / 1.459
2wsa MYAGlycylpeptide N-tetradecanoyltransferase / 1.450
5ag6 MYAGlycylpeptide N-tetradecanoyltransferase / 1.446
4c2y MYAGlycylpeptide N-tetradecanoyltransferase 1 / 1.444
2wuu NHWGlycylpeptide N-tetradecanoyltransferase / 1.442
4ucn MYAGlycylpeptide N-tetradecanoyltransferase / 1.442
5a28 MYAGlycylpeptide N-tetradecanoyltransferase / 1.439
4c2z MYAGlycylpeptide N-tetradecanoyltransferase 1 / 1.419
4c2x NHWGlycylpeptide N-tetradecanoyltransferase 2 / 1.407
4a30 MYAGlycylpeptide N-tetradecanoyltransferase / 1.363
5ag7 MYAGlycylpeptide N-tetradecanoyltransferase / 1.350
4a33 MYAGlycylpeptide N-tetradecanoyltransferase / 1.300
4cav MYAGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.036
1iid NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.976
4cax MYAGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.969
2nmt NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.965
4qbj NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.866
4qvt ACOAcetyltransferase YpeA 2.3.1 0.672
1pu9 COAHAT A1 / 0.669
2rc6 FADFerredoxin--NADP reductase / 0.659
4dve BTNBiotin transporter BioY / 0.652
3gki CLRNiemann-Pick C1 protein / 0.650