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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4b10 NHW Glycylpeptide N-tetradecanoyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4b10 NHWGlycylpeptide N-tetradecanoyltransferase / 1.743
4b11 NHWGlycylpeptide N-tetradecanoyltransferase / 1.706
4bbh NHWGlycylpeptide N-tetradecanoyltransferase / 1.703
4b13 NHWGlycylpeptide N-tetradecanoyltransferase / 1.687
4c68 NHWGlycylpeptide N-tetradecanoyltransferase / 1.682
2yne NHWGlycylpeptide N-tetradecanoyltransferase / 1.656
4b12 NHWGlycylpeptide N-tetradecanoyltransferase / 1.655
4b14 NHWGlycylpeptide N-tetradecanoyltransferase / 1.652
4a95 NHWGlycylpeptide N-tetradecanoyltransferase / 1.649
2ync YNCGlycylpeptide N-tetradecanoyltransferase / 1.599
4a31 MYAGlycylpeptide N-tetradecanoyltransferase / 1.467
4cgp MYAGlycylpeptide N-tetradecanoyltransferase / 1.438
5ag5 MYAGlycylpeptide N-tetradecanoyltransferase / 1.427
5ag4 MYAGlycylpeptide N-tetradecanoyltransferase / 1.423
5ag6 MYAGlycylpeptide N-tetradecanoyltransferase / 1.415
4a32 MYAGlycylpeptide N-tetradecanoyltransferase / 1.409
2wsa MYAGlycylpeptide N-tetradecanoyltransferase / 1.371
4a30 MYAGlycylpeptide N-tetradecanoyltransferase / 1.360
4ucn MYAGlycylpeptide N-tetradecanoyltransferase / 1.352
4c2x NHWGlycylpeptide N-tetradecanoyltransferase 2 / 1.337
4c2z MYAGlycylpeptide N-tetradecanoyltransferase 1 / 1.313
5a28 MYAGlycylpeptide N-tetradecanoyltransferase / 1.307
5ag7 MYAGlycylpeptide N-tetradecanoyltransferase / 1.295
4c2y MYAGlycylpeptide N-tetradecanoyltransferase 1 / 1.290
2wuu NHWGlycylpeptide N-tetradecanoyltransferase / 1.286
4a2z MYAGlycylpeptide N-tetradecanoyltransferase / 1.278
5a27 MYAGlycylpeptide N-tetradecanoyltransferase / 1.175
4a33 MYAGlycylpeptide N-tetradecanoyltransferase / 1.165
4cav MYAGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.103
4cax MYAGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.091
2nmt NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.995
1iid NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.992
4qbj NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.971
5kgp ACOPredicted acetyltransferase / 0.667
4lch 1WNUDP-3-O-acyl-N-acetylglucosamine deacetylase / 0.658
4i1r LZUMucosa-associated lymphoid tissue lymphoma translocation protein 1 3.4.22 0.657
2ocf ESTEstrogen receptor / 0.656
1zz1 SHHHistone deacetylase-like amidohydrolase 3.5.1 0.650
3ew2 BTNHypothetical conserved protein / 0.650