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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4azh LOG Beta-N-acetylhexosaminidase 3.2.1.52

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4azh LOGBeta-N-acetylhexosaminidase 3.2.1.52 1.023
2j7c IDEBeta-glucosidase A 3.2.1.21 0.731
2j7d GI1Beta-glucosidase A 3.2.1.21 0.721
2e40 LGCBeta-glucosidase 1A 3.2.1.21 0.715
4iif CTSBeta-glucosidase 1 3.2.1.21 0.713
2xpk Z0MO-GlcNAcase NagJ / 0.695
2cbj OANO-GlcNAcase NagJ / 0.685
3zj6 VM2Raucaffricine-O-beta-D-glucosidase 3.2.1.125 0.683
3vil SA0Beta-glucosidase / 0.673
2wb5 VGBO-GlcNAcase NagJ / 0.663
4zlg LGCPutative b-glycan phosphorylase / 0.662
2wbg LGSBeta-glucosidase A 3.2.1.21 0.659
2wzg UPGUncharacterized protein / 0.652