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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4axa RKD cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4axa RKDcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 1.019
2uw5 GVNcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.793
2vo6 M05cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.746
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4e5f 0N7Polymerase acidic protein / 0.660
4gv1 0XZRAC-alpha serine/threonine-protein kinase 2.7.11.1 0.658
2npa MMBPeroxisome proliferator-activated receptor alpha / 0.654
2ycq UPXSerine/threonine-protein kinase Chk2 2.7.11.1 0.651
3cqw CQWRAC-alpha serine/threonine-protein kinase 2.7.11.1 0.650