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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ax9 N5N Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ax9 N5NProthrombin 3.4.21.5 1.107
4ayv 9MQProthrombin 3.4.21.5 0.864
4ayy 9MXProthrombin 3.4.21.5 0.843
4az2 9MUProthrombin 3.4.21.5 0.835
1ype UIPProthrombin 3.4.21.5 0.821
4e7r 0NWProthrombin 3.4.21.5 0.808
1ypg UIRProthrombin 3.4.21.5 0.807
2cn0 F25Prothrombin 3.4.21.5 0.802
1ypk CCRProthrombin 3.4.21.5 0.797
1d4p BPPProthrombin 3.4.21.5 0.775
2cf9 348Prothrombin 3.4.21.5 0.774
1ypj UIBProthrombin 3.4.21.5 0.767
1vzq SHYProthrombin 3.4.21.5 0.761
1ypm RA4Prothrombin 3.4.21.5 0.760
1nzq 162Prothrombin 3.4.21.5 0.758
3hat GLY_VAL_ARG_RNGProthrombin 3.4.21.5 0.756
2zhf 49UProthrombin 3.4.21.5 0.750
1k22 MELProthrombin 3.4.21.5 0.748
2ziq 26UProthrombin 3.4.21.5 0.747
2v3o I26Prothrombin 3.4.21.5 0.745
2zda 32UProthrombin 3.4.21.5 0.742
4baq M4ZProthrombin 3.4.21.5 0.741
2zg0 50UProthrombin 3.4.21.5 0.740
1o0d 163Prothrombin 3.4.21.5 0.737
7kme ACE_0BN_CHG_PRRProthrombin 3.4.21.5 0.736
1c4v IH2Prothrombin 3.4.21.5 0.732
2zfq 45UProthrombin 3.4.21.5 0.730
2zgx 29UProthrombin 3.4.21.5 0.728
1riw OSCProthrombin 3.4.21.5 0.727
1ypl RA8Prothrombin 3.4.21.5 0.727
2gde SN3Prothrombin 3.4.21.5 0.724
1oyt FSNProthrombin 3.4.21.5 0.720
4ban M6SProthrombin 3.4.21.5 0.717
2cf8 ESHProthrombin 3.4.21.5 0.716
1c5n ESIProthrombin 3.4.21.5 0.714
2bok 784Coagulation factor X 3.4.21.6 0.710
2zfr 46UProthrombin 3.4.21.5 0.707
2zhq 27UProthrombin 3.4.21.5 0.706
1ae8 AZLProthrombin 3.4.21.5 0.705
1c4u IH1Prothrombin 3.4.21.5 0.705
4bak M67Prothrombin 3.4.21.5 0.705
2v3h I25Prothrombin 3.4.21.5 0.699
1t4v 14AProthrombin 3.4.21.5 0.698
4bam MM9Prothrombin 3.4.21.5 0.698
3v0x ANHCationic trypsin 3.4.21.4 0.696
2zi2 24UProthrombin 3.4.21.5 0.692
4bao MVFProthrombin 3.4.21.5 0.692
2zhw 12UProthrombin 3.4.21.5 0.690
3biu 10UProthrombin 3.4.21.5 0.688
1kts C24Prothrombin 3.4.21.5 0.687
1mue CDDProthrombin 3.4.21.5 0.684
3utu 1TSProthrombin 3.4.21.5 0.682
3biv 11UProthrombin 3.4.21.5 0.681
1uvs I11Prothrombin 3.4.21.5 0.680
1k21 IGNProthrombin 3.4.21.5 0.678
1c1u BAIProthrombin 3.4.21.5 0.673
1nt1 T76Prothrombin 3.4.21.5 0.671
1z71 L17Prothrombin 3.4.21.5 0.670
2anm CDOProthrombin 3.4.21.5 0.670
1d9i 00PProthrombin 3.4.21.5 0.669
1sb1 165Prothrombin 3.4.21.5 0.666
3plp BBACationic trypsin 3.4.21.4 0.666
2r2m I50Prothrombin 3.4.21.5 0.663
2zhe 13UProthrombin 3.4.21.5 0.662
2a2x NA9Prothrombin 3.4.21.5 0.661
1gj5 130Prothrombin 3.4.21.5 0.660
1f92 UKPUrokinase-type plasminogen activator 3.4.21.73 0.659
2pks G44Prothrombin 3.4.21.5 0.659
1ta2 176Prothrombin 3.4.21.5 0.656
1wqv PSMCoagulation factor VII 3.4.21.21 0.655
2c4f GILCoagulation factor VII 3.4.21.21 0.654
5cmx 0G6Prothrombin 3.4.21.5 0.654